New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3701042	38 (0.720)	3 (0.060)	3/240	NT	6.8%	coding (450/1053 nt)	PP_3266	hypothetical protein
	?	NC_002947	= 3701062	46 (0.920)					coding (430/1053 nt)	PP_3266	hypothetical protein

AAGGCTGCCATTACCCTTCAGGCGCTCGGCGCAGCCTTGGGCGCGTTCACGGGCCGCTTTGCGTGTGTGTGGCAGCAGCTCCAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3700895‑3701042 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcccgCTGCTGTTGGGCGAAAAACTCGGGCCGTTCCTGTG  <  NC_002947/3701062‑3701028                                                                                                                                                                                         AAGGCTGCCATTACCCTTCAGGCGCTCGGCGCAGCCTTGGGCGCGTTCACGGGCCGCTTTGCGTGTGTGTGGCAGCAGCTCCAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCC                                      >  2:294222/1‑147                                   CCTTGGGCGCGTTCACGGGCCGCTTTGCGTGTGTGTGGCAGCAGCTCCAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGGACTGCCACAGGAACGGCCCGCTGCTGTTGGGCGAAAAACTCGGGCCGTTCCTGT   <  6:31789/148‑1                                                                                                       TTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGCTGCTGTTGGGCGAAAAACTCGGGCCGTTCCTGTG  <  5:61501/81‑1                                                                                                       TTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGCTGCTGTTGGGCGAAAAACTCGGGCCGTTCCTGTG  >  6:61501/1‑81                                                                                                                                                                                         AAGGCTGCCATTACCCTTCAGGCGCTCGGCGCAGCCTTGGGCGCGTTCACGGGCCGCTTTGCGTGTGTGTGGCAGCAGCTCCAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3700895‑3701042 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcccgCTGCTGTTGGGCGAAAAACTCGGGCCGTTCCTGTG  <  NC_002947/3701062‑3701028

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.