New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3701042 | 38 (0.720) | 3 (0.060) | 3/240 | NT | 6.8% | coding (450/1053 nt) | PP_3266 | hypothetical protein |
? | NC_002947 | = 3701062 | 46 (0.920) | coding (430/1053 nt) | PP_3266 | hypothetical protein |
CGCAGCCTTGGGCGCGTTCACGGGCCGCTTTGCGTGTGTGTGGCAGCAGCTCCAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGCTTCACGCCAGCCCA > NC_002947/3700924‑3701187 | cgcAGCCTTGGGCGCGTTCACGGGCCGCTTTGCGTGTGTGTGGCAGCAGCTCCAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGaa < 1:59903/149‑1 (MQ=255) gcAGCCTTGGGCGCGTTCACGGGCCGCTTTGCGTGTGTGTGGCAGCAGCTCCAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAg < 1:130423/149‑1 (MQ=255) ccTTGGGCGCGTTCACGGGCCGCTTTGCGTGTGTGTGGCAGCAGCTCCAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGGACTGCCACAGGAACGGCCCGctgctgttgggcgaaaaactcgggccgttcctgt < 6:31789‑M1/148‑35 (MQ=255) ggCGCGTTCACGGGCCGCTTTGCGTGTGTGTGGCAGCAGCTCCAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGaaaaaa < 1:294222/148‑1 (MQ=255) gTTCACGGGCCGCTTTGCGTGTGTGTGGCAGCAGCTCCAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGttt < 1:170762/109‑1 (MQ=255) gTTCACGGGCCGCTTTGCGTGTGTGTGGCAGCAGCTCCAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGttt > 2:170762/1‑109 (MQ=255) ttCACGGGCCGCTTTGCGTGTGTGTGGCAGCAGCTCCAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGaa > 3:249480/1‑133 (MQ=255) gtCACGGGCCGCTTTGCGTGTGTGTGGCAGCAGCTCCAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGaa < 4:249480/132‑1 (MQ=255) gggCCGCTTTGCGTGTGTGTGGCAGCAGCTCCAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGc > 1:102751/1‑149 (MQ=255) cTCCAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCGACAGGAACGGCCCGAGTTTTTCGCCCAAc < 5:236484/85‑1 (MQ=255) cAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGAc > 5:72531/1‑144 (MQ=255) cAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGAc < 6:72531/144‑1 (MQ=255) cAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATggg > 5:53727/1‑149 (MQ=255) ggAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGt > 3:237634/1‑148 (MQ=255) ggCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAgc > 2:39177/1‑149 (MQ=255) aaaaCGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGcgcg > 7:292505/1‑149 (MQ=255) aaCGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCACCCGCCGGACATGGGTGATATAGCGCGGc > 3:103454/1‑149 (MQ=255) aaCGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGc > 4:147038/1‑149 (MQ=255) aaCGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGc > 7:167876/1‑149 (MQ=255) tCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCtt < 1:39177/149‑1 (MQ=255) tCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCtt < 6:53727/149‑1 (MQ=255) ttCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGctgctgttgggcgaaaaactcgggccgttcctgtg < 5:61501‑M1/81‑36 (MQ=255) ttCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGctgctgttgggcgaaaaactcgggccgttcctgtg > 6:61501‑M1/1‑46 (MQ=255) ttCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCaa > 7:245296/1‑114 (MQ=255) ttCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCaa < 8:245296/114‑1 (MQ=255) cATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGa > 7:15433/1‑147 (MQ=255) cATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGa < 8:15433/147‑1 (MQ=255) cATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGAc < 4:103454/148‑1 (MQ=255) aTCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTg > 3:191131/1‑149 (MQ=255) gAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCg > 2:255612/1‑148 (MQ=255) aCTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAac < 8:292505/149‑1 (MQ=255) ttCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGa < 7:42536/139‑1 (MQ=255) ttCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGa > 8:42536/1‑139 (MQ=255) cATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACg < 4:191131/148‑1 (MQ=255) aTGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGaa < 2:102751/149‑1 (MQ=255) tAGGGGGGAACTGCCACAGGAACGGCACGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAAACGCCGGACATGGGTGATATAGCGCGGCCCATTGACTGCGAACACGAAGACt > 7:35377/1‑149 (MQ=255) ggAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGc < 3:147038/149‑1 (MQ=255) aCTGCCACATGAACGGCCCGAGTTTTTCGCCCAACAGCAGCTGGCCGTAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGt < 8:35377/148‑1 (MQ=255) aCTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGtt < 4:237634/149‑1 (MQ=255) cTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTg > 4:97624/1‑149 (MQ=255) cacaGGAACGGCCCGAGTTTTTCGCCCAACAGCAGcgggccgttcctgtggcagttcccccctagcatgaagttcgatgaa < 5:61501‑M2/81‑47 (MQ=255) cacaGGAACGGCCCGAGTTTTTCGCCCAACAGCAGcgggccgttcctgtggcagttcccccctagcatgaagttcgatgaa > 6:61501‑M2/1‑35 (MQ=255) acaGGAACGGCCCGAGTTTTTCGCCCAACAGCAGcgggccgttcctgtggcagtccccccctagcatgaagttcgatgaagaccgttttgcccggttcctggagctgctgccacacacacgcaaagcggcccgtgaacgcgcccaagg < 6:31789‑M2/148‑115 (MQ=255) acaGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGtt < 4:194552/143‑1 (MQ=255) acaGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGtt > 3:194552/1‑143 (MQ=255) caGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGCTTCAc < 3:97624/149‑1 (MQ=255) cccGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGaa > 4:312949/1‑120 (MQ=255) cccGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGaa < 3:312949/120‑1 (MQ=255) cccGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGc > 5:45708/1‑135 (MQ=255) cccGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGc < 6:45708/135‑1 (MQ=255) ccGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGCTTCACGCCAGcc > 5:205432/1‑146 (MQ=255) cGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGCTTCACGCCAGcc > 7:33945/1‑145 (MQ=255) cGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGCTTCACGCCAGCCCa < 3:227193/147‑1 (MQ=255) cGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGCTTCACGCCAGCCCa > 4:227193/1‑147 (MQ=255) gAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGc > 8:244580/1‑132 (MQ=255) gAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGc < 7:244580/132‑1 (MQ=255) | CGCAGCCTTGGGCGCGTTCACGGGCCGCTTTGCGTGTGTGTGGCAGCAGCTCCAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGCTTCACGCCAGCCCA > NC_002947/3700924‑3701187 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |