New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3701042	38 (0.720)	3 (0.060)	3/240	NT	6.8%	coding (450/1053 nt)	PP_3266	hypothetical protein
	?	NC_002947	= 3701062	46 (0.920)					coding (430/1053 nt)	PP_3266	hypothetical protein

CGCAGCCTTGGGCGCGTTCACGGGCCGCTTTGCGTGTGTGTGGCAGCAGCTCCAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGCTTCACGCCAGCCCAGATAGCGCTCGGGCGT  >  NC_002947/3700924‑3701203                                                                                                                                           |                                                                                                                                              cgcAGCCTTGGGCGCGTTCACGGGCCGCTTTGCGTGTGTGTGGCAGCAGCTCCAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGaa                                                                                                                                     <  1:59903/149‑1 (MQ=255)  gcAGCCTTGGGCGCGTTCACGGGCCGCTTTGCGTGTGTGTGGCAGCAGCTCCAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAg                                                                                                                                    <  1:130423/149‑1 (MQ=255)           ggCGCGTTCACGGGCCGCTTTGCGTGTGTGTGGCAGCAGCTCCAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGaaaaaa                                                                                                                            <  1:294222/148‑1 (MQ=255)                 ttCACGGGCCGCTTTGCGTGTGTGTGGCAGCAGCTCCAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGaa                                                                                                                                     >  3:249480/1‑133 (MQ=255)                 gtCACGGGCCGCTTTGCGTGTGTGTGGCAGCAGCTCCAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGaa                                                                                                                                     <  4:249480/132‑1 (MQ=255)                      gggCCGCTTTGCGTGTGTGTGGCAGCAGCTCCAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGc                                                                                                                >  1:102751/1‑149 (MQ=255)                                                     cAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGAc                                                                                      >  5:72531/1‑144 (MQ=255)                                                     cAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGAc                                                                                      <  6:72531/144‑1 (MQ=255)                                                     cAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATggg                                                                                 >  5:53727/1‑149 (MQ=255)                                                       ggAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGt                                                                                >  3:237634/1‑148 (MQ=255)                                                              ggCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAgc                                                                        >  2:39177/1‑149 (MQ=255)                                                                 aaaaCGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGcgcg                                                                     >  7:292505/1‑149 (MQ=255)                                                                   aaCGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCACCCGCCGGACATGGGTGATATAGCGCGGc                                                                   >  3:103454/1‑149 (MQ=255)                                                                   aaCGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGc                                                                   >  4:147038/1‑149 (MQ=255)                                                                   aaCGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGc                                                                   >  7:167876/1‑149 (MQ=255)                                                                        tCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCtt                                                              <  1:39177/149‑1 (MQ=255)                                                                        tCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCtt                                                              <  6:53727/149‑1 (MQ=255)                                                                          ttCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCaa                                                                                               <  8:245296/114‑1 (MQ=255)                                                                          ttCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCaa                                                                                               >  7:245296/1‑114 (MQ=255)                                                                            cATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGa                                                            <  8:15433/147‑1 (MQ=255)                                                                            cATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGa                                                            >  7:15433/1‑147 (MQ=255)                                                                            cATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGAc                                                           <  4:103454/148‑1 (MQ=255)                                                                             aTCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTg                                                         >  3:191131/1‑149 (MQ=255)                                                                                gAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCg                                                       >  2:255612/1‑148 (MQ=255)                                                                                  aCTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAac                                                    <  8:292505/149‑1 (MQ=255)                                                                                    ttCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGa                                                            <  7:42536/139‑1 (MQ=255)                                                                                    ttCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGa                                                            >  8:42536/1‑139 (MQ=255)                                                                                      cATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACg                                                 <  4:191131/148‑1 (MQ=255)                                                                                       aTGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGaa                                               <  2:102751/149‑1 (MQ=255)                                                                                           tAGGGGGGAACTGCCACAGGAACGGCACGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAAACGCCGGACATGGGTGATATAGCGCGGCCCATTGACTGCGAACACGAAGACt                                           >  7:35377/1‑149 (MQ=255)                                                                                                 ggAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGc                                     <  3:147038/149‑1 (MQ=255)                                                                                                    aCTGCCACATGAACGGCCCGAGTTTTTCGCCCAACAGCAGCTGGCCGTAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGt                                   <  8:35377/148‑1 (MQ=255)                                                                                                    aCTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGtt                                  <  4:237634/149‑1 (MQ=255)                                                                                                     cTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTg                                 >  4:97624/1‑149 (MQ=255)                                                                                                         cacaGGAACGGCCCGAGTTTTTCGCCCAACAGCAGcgggccgttcctgtggcagttcccccctagcatgaagttcgatgaa                                                                                                 <  5:61501‑M2/81‑47 (MQ=255)                                                                                                         cacaGGAACGGCCCGAGTTTTTCGCCCAACAGCAGcgggccgttcctgtggcagttcccccctagcatgaagttcgatgaa                                                                                                 >  6:61501‑M2/1‑35 (MQ=255)                                                                                                          acaGGAACGGCCCGAGTTTTTCGCCCAACAGCAGcgggccgttcctgtggcagtccccccctagcatgaagttcgatgaagaccgttttgcccggttcctggagctgctgccacacacacgcaaagcggcccgtgaacgcgcccaagg                             <  6:31789‑M2/148‑115 (MQ=255)                                                                                                          acaGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGtt                                  <  4:194552/143‑1 (MQ=255)                                                                                                          acaGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGtt                                  >  3:194552/1‑143 (MQ=255)                                                                                                           caGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGCTTCAc                           <  3:97624/149‑1 (MQ=255)                                                                                                                    cccGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGaa                                               <  3:312949/120‑1 (MQ=255)                                                                                                                    cccGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGaa                                               >  4:312949/1‑120 (MQ=255)                                                                                                                    cccGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGc                                <  6:45708/135‑1 (MQ=255)                                                                                                                    cccGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGc                                >  5:45708/1‑135 (MQ=255)                                                                                                                     ccGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGCTTCACGCCAGcc                    >  5:205432/1‑146 (MQ=255)                                                                                                                      cGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGCTTCACGCCAGcc                    >  7:33945/1‑145 (MQ=255)                                                                                                                      cGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGCTTCACGCCAGCCCa                  >  4:227193/1‑147 (MQ=255)                                                                                                                      cGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGCTTCACGCCAGCCCa                  <  3:227193/147‑1 (MQ=255)                                                                                                                       gAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGc                                <  7:244580/132‑1 (MQ=255)                                                                                                                       gAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGc                                >  8:244580/1‑132 (MQ=255)                                                                                                                                 cccAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGCTTCACGCCAGCCCAGATAGCGCTCggg     >  6:66995/1‑149 (MQ=255)                                                                                                                                    aaCAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGCTTCACGCCAGCCCAGATAGCGCTCGGGCGt  >  4:20777/1‑149 (MQ=255)                                                                                                                                    aaCAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGCTTCACGCCAGCCCAGATAGCGCTCGGGCGt  >  4:25535/1‑149 (MQ=255)                                                                                                                                           |                                                                                                                                              CGCAGCCTTGGGCGCGTTCACGGGCCGCTTTGCGTGTGTGTGGCAGCAGCTCCAGGAACCGGGCAAAACGGTCTTCATCGAACTTCATGCTAGGGGGGAACTGCCACAGGAACGGCCCGAGTTTTTCGCCCAACAGCAGCGGGCCGGAAGCGAAAAAATTGGCCACGGGCTCTTCGATTTCCTTCAACCGCCGGACATGGGTGATATAGCGCGGCCCCTTGACTGCGAACACGAAGCCTTCCGGCGTTGCTTCACGCCAGCCCAGATAGCGCTCGGGCGT  >  NC_002947/3700924‑3701203

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.