New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3733332	66 (1.250)	4 (0.080)	4/248	NT	5.8%	coding (21/615 nt)	PP_3300	Transcriptional regulator, tetR family
	?	NC_002947	= 3733344	66 (1.280)					coding (33/615 nt)	PP_3300	Transcriptional regulator, tetR family

ACAGCAGAGCAATCGTTCGGTAGGGAAGCATGATGATTCTCATAGACCAAGAGGAGGTGTGACCATATTATATTTTGGTCACACTCTGTCAATCAGTTCCAGGATGCTTCAAAAATGAGTAAATCTTCTCCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3733198‑3733332 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccGCGCGCCGGCGAGGGTGGAGAAGATTTACTCATTTTTGAAGCATCCTGGAACTGATTGACAGAGTGTGACCAAAATATAATATGGTCACACCTCCTCTTGGTCTATGAGAATCATCATGCTTCCCTACCGAACGATTGCTCTGCTGTT  <  NC_002947/3733344‑3733197                                                                                                                                                                                                                                                                                             ACAGCAGAGCAATCGTTCGGTAGGGAAGCATGATGATTCTCATAGACCAAGAGGAGGTGTGACCATATTATATTTTGGTCACACTCTGTCAATCAGTTCCAGGATGCTTCAAAAATGAGTAAATCTTCTCCACCCGCGCGCCGGCGAGG                                                                                                                                        >  6:14312/1‑149                                                                                                     AGGATGCTTCAAAAATGAGTAAATCTTCTCCACCCTCGCCGGCGCGCGGGTGGAGAAGATTTACTCATTTTTGAAGCATCCTGGAACTGATTGACAGAGTGTGACCAAAATATAATATGGTCACACCTCCTCTTGGTCTATGAGAtcgg                                    >  1:276481/1‑145                                                                                                     AGGATGCTTCAAAAATGAGTAAATCTTCTCCACCCTCGCCGGCGCGCGGGTGGAGAAGATTTACTCATTTTTGAAGCATCCTGGAACTGATTGACAGAGTGTGACCAAAATATAATATGGTCACACCTCCTCTTGGTCTAT                                            <  2:276481/141‑1                                                                                                               AAAAATGAGTAAATCTTCTCCACCCTCGCCGGCGCGCGGGTGGAGAAGATTTACTCATTTTTGAAGCATCCTGGAACTGATTGACAGAGTGTGACCAAAATATAATATGGTCACACCTCCTCTTGGTCTATGAGAATCATCATGCTTCC                          >  5:14312/1‑149                                                                                                                                     CCCGCGCGCCGGCGAGGGTGGAGAAGATTTACTCATTTTTGAAGCATCCTGGAACTGATTGACAGAGTGTGACCAAAATATAATATGGTCACACCTCCTCTTGGTCTATGAGAATCATCATGCTTCCCTACCGAACGATTGCTCTGCTG    >  1:122204/1‑149                                                                                                                                     CCCGCGCGCCGGCGAGGGTGGAGAAGATTTACTCATTTTTGAAGCATCCTGGAACTGATTGACAGAGTGTGACCAAAATATAATATGGTCACACCTCCTCTTGGTCTATGAGAATCATCATGCTTCCCTACCGAACGATTGCTCTGCTG    <  3:214123/149‑1                                                                                                                                       CGCGCGCCGGCGAGGGTGGAGAAGATTTACTCATTTTTGAAGCATCCTGGAACTGATTGACAGAGTGTGACCAAAATATAATATGGTCACACCTCCTCTTGGTCTATGAGAATCATCATGCTTCCCTACCGAACGATTGCTCTGCTGTT  <  2:262482/149‑1                                                                                                                                       CGCGCGCCGGCGAGGGTGGAGAAGATTTACTCATTTTTGAAGCATCCTGGAACTGATTGACAGAGTGTGACCAAAATATAATATGGTCACACCTCCTCTTGGTCTATGAGAATCATCATGCTTCCCTACCGAACGATTGCTCTGCTGTT  <  5:169336/149‑1                                                                                                                                                                                                                                                                                             ACAGCAGAGCAATCGTTCGGTAGGGAAGCATGATGATTCTCATAGACCAAGAGGAGGTGTGACCATATTATATTTTGGTCACACTCTGTCAATCAGTTCCAGGATGCTTCAAAAATGAGTAAATCTTCTCCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3733198‑3733332 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccGCGCGCCGGCGAGGGTGGAGAAGATTTACTCATTTTTGAAGCATCCTGGAACTGATTGACAGAGTGTGACCAAAATATAATATGGTCACACCTCCTCTTGGTCTATGAGAATCATCATGCTTCCCTACCGAACGATTGCTCTGCTGTT  <  NC_002947/3733344‑3733197

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.