New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3746953 =	45 (0.850)	6 (0.120)	6/238	NT	14.4%	intergenic (+22/+62)	paoC/kefB‑II	aromatic aldehyde dehydrogenase molybdopterin‑binding subunit/glutathione‑regulated potassium/H+ antiporter
	?	NC_002947	3747009 =	29 (0.590)					intergenic (+78/+6)	paoC/kefB‑II	aromatic aldehyde dehydrogenase molybdopterin‑binding subunit/glutathione‑regulated potassium/H+ antiporter

GTGCGCACGCGATGCCGCACGTTTTGCCCTGGAAACATCCGGCGGTCTATTTGCCGGGCGAGCGTTGGTTCTGGGAAATATCGAGCGCATTGATCCGCCTGCGCCTGAAGCCACCGACGCCCAGTGAGCGGGAATCCGACGGCGATGCAGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3747107‑3746953 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgcaGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAATAGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCGCGTGCGCACCTCGTCGGTCACCGCGTCAGCTTCAACGCTC  >  NC_002947/3747009‑3747138                                                                                                                                                                                                                                                                                               GTGCGCACGCGATGCCGCACGTTTTGCCCTGGAAACATCCGGCGGTCTATTTGCCGGGCGAGCGTTGGTTCTGGGAAATATCGAGCGCATTGATCCGCCTGCGCCTGAAGCCACCGACGCCCAGTGAGCGGGAATCCGACGGCGATGCA                                                                                                                                          <  5:82831/149‑1         GCGATGCCGCACGTTTTGCCCTGGAAACATCCGGCGGTCTATTTGCCGGGCGAGCGTTGGTTCTGGGAAATATCGAGCGCATTGATCCGCCTGCGCCTGAAGCCACCGACGCCCAGTGAGCGGGAATCCGACGGCGATGCAGGCG                                                                                                                                      <  5:105091/145‑1         GCGATGCCGCACGTTTTGCCCTGGAAACATCCGGCGGTCTATTTGCCGGGCGAGCGTTGGTTCTGGGAAATATCGAGCGCATTGATCCGCCTGCGCCTGAAGCCACCGACGCCCAGTGAGCGGGAATCCGACGGCGATGCAGGCG                                                                                                                                      >  6:105091/1‑145                                                                                        CATTGATCCGCCTGCGCCTGAAGCCACCGACGCCCAGTGAGCGGGAATCCGACGGCGATGCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAATA                                                                                <  3:228749/120‑1                                                                                        CATTGATCCGCCTGCGCCTGAAGCCACCGACGCCCAGTGAGCGGGAATCCGACGGCGATGCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAATA                                                                                >  4:228749/1‑120                                                                                                   CTGCGCCTGAAGCCACCGACGCCCAGTGAGCGGGAATCCGACGGCGATGCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAATAGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCGCG                                        >  8:28666/1‑149                                                                                                    TGCGCCTGAAGCCACCGACGCCCAGTGAGCGGGAATCCGACGGCGATGCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAATAGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCGCGT                                       >  1:62240/1‑149                                                                                                                 ACCGACGCCCAGTGAGCGGGAATCCGACGGCGATGCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAATAGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCGCGTGCGCACCTCGTCG                          <  7:28666/149‑1                                                                                                                    GACGCCCAGTGAGCGGGAATCCGACGGCGATGCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAATAGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCGCGTGCGCACCTCGTCGGTC                       <  2:62240/149‑1                                                                                                                                                          CAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAATAGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCGCGTGCGCACCTCGTCGGTCACCGCGTCAGCTTCAACGCTC  <  3:44852/132‑1                                                                                                                                                          CAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAATAGACCGCCGGATGTTTCCAGGGCAAAACGAGCGGCATCGCGTCCGCACCTCGTCGGTCACCGCGTCAGCTTCAAAGCTC  >  4:44852/1‑132                                                                                                                                                           AGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAATAGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCGCGTGCGCACCTCGTCGGTCA                      <  1:67076/111‑1                                                                                                                                                           AGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAATAGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCGCGTGCGCACCTCGTCGGTCA                      >  2:67076/1‑111                                                                                                                                                                                                                                                                                               GTGCGCACGCGATGCCGCACGTTTTGCCCTGGAAACATCCGGCGGTCTATTTGCCGGGCGAGCGTTGGTTCTGGGAAATATCGAGCGCATTGATCCGCCTGCGCCTGAAGCCACCGACGCCCAGTGAGCGGGAATCCGACGGCGATGCAGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3747107‑3746953 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgcaGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAATAGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCGCGTGCGCACCTCGTCGGTCACCGCGTCAGCTTCAACGCTC  >  NC_002947/3747009‑3747138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.