New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3746953 =	45 (0.850)	6 (0.120)	6/238	NT	14.4%	intergenic (+22/+62)	paoC/kefB‑II	aromatic aldehyde dehydrogenase molybdopterin‑binding subunit/glutathione‑regulated potassium/H+ antiporter
	?	NC_002947	3747009 =	29 (0.590)					intergenic (+78/+6)	paoC/kefB‑II	aromatic aldehyde dehydrogenase molybdopterin‑binding subunit/glutathione‑regulated potassium/H+ antiporter

CCACGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCGCGTGCGCACCTCGTCGGTCACCGCGTCAGCTTCAACGCTCGAGGCTCC  >  NC_002947/3746861‑3747146                                                                                                                                                     |                                                                                                                                           cgcgatgccgcacgttttgccctggaaacatccggcggtctatttgccgggcgagcgttggttctgggaaatatcgagcgcattgatccgccTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTcaggcgcag                                                                                                                                            >  8:28666‑M1/93‑149 (MQ=255)   aCGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTcaggcgcaggc                                                                                                                                          >  8:103041/1‑149 (MQ=255)            cGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATg                                                                                                                                 <  8:2463/149‑1 (MQ=255)                  aGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTc                                                                                                                            >  6:102576/1‑148 (MQ=255)                     gAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGata                                                                                                                        >  5:349892/1‑149 (MQ=255)                              aTCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAg                                                                                                                >  5:169627/1‑148 (MQ=255)                               tCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGaa                                                                                                              <  6:349892/149‑1 (MQ=255)                                   gCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCa                                                                                                                 >  1:220560/1‑142 (MQ=255)                                   gCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCa                                                                                                                 <  2:220560/142‑1 (MQ=255)                                   gCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCaa                                                                                                          >  4:288769/1‑149 (MQ=255)                                    cTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAAc                                                                                                         <  1:183830/149‑1 (MQ=255)                                     tCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGTGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAAc                                                                                                         >  3:208053/1‑148 (MQ=255)                                         tatttgccgggcgagcgttggttctgggaaatatcgagcgcattgatccgccTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATg                                                                                                                                 >  4:228749‑M1/53‑120 (MQ=255)                                         tatttgccgggcgagcgttggttctgggaaatatcgagcgcattgatccgccTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATg                                                                                                                                 <  3:228749‑M1/68‑1 (MQ=255)                                                ctgAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCgg                                                                                               <  3:288769/147‑1 (MQ=255)                                                ctgAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGc                                                                                              <  6:169627/148‑1 (MQ=255)                                                   aaaGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCaaa                                                                                           >  7:327817/1‑148 (MQ=255)                                                   aaaGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCaaa                                                                                           >  5:215549/1‑148 (MQ=255)                                                         aacaGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGAccg                                                                                   <  7:103041/149‑1 (MQ=255)                                                            aGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCACCGCTCGCCCGGCAAAT‑AGCccgccg                                                                                >  6:364206/1‑149 (MQ=255)                                                                  gTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGa                                                                              <  4:289248/145‑1 (MQ=255)                                                                  gTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGa                                                                              >  3:289248/1‑145 (MQ=255)                                                                        gTAATATCTGTGCATGAGGTTTGTGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGATGTTTCCAg                                                                     <  4:208053/148‑1 (MQ=255)                                                                                tgtgCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGGATCAGGCGCAGGCGGATCAATGCGCTCGATATTTCTCAGACCCAACGCTCGCCCGGCAAAT‑AGACCGCCGGATGTTTCCAGGGCAAAACg                                                            >  6:291354/1‑149 (MQ=255)                                                                                 cattgatccgcctgcgcctgaagccaccgacgcccagtgagcgggaatccgacggcgatgcaggcgcaGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑a                                                                                        >  4:228749‑M2/69‑120 (MQ=255)                                                                                 cattgatccgcctgcgcctgaagccaccgacgcccagtgagcgggaatccgacggcgatgcaggcgcaGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑a                                                                                        <  3:228749‑M2/52‑1 (MQ=255)                                                                                      tGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGAt                                                                             <  2:63135/126‑1 (MQ=255)                                                                                      tGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGAt                                                                             >  1:63135/1‑126 (MQ=255)                                                                                          gTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATcg                                                  <  6:215549/149‑1 (MQ=255)                                                                                          gTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATcg                                                  <  8:327817/149‑1 (MQ=255)                                                                                            ctgcgcctgaagccaccgacgcccagtgagcgggaatccgacggcgatgcaggcgcaGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATcgcg                                                >  8:28666‑M2/58‑149 (MQ=255)                                                                                             tgcgcctgaagccaccgacgcccagtgagcgggaatccgacggcgatgcaggcgcaGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCGCGt                                               >  1:62240‑M2/57‑149 (MQ=255)                                                                                               CGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATcgc                                                 >  6:105091‑M1/1‑145 (MQ=255)                                                                                               CGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATcgc                                                 <  5:105091‑M1/145‑1 (MQ=255)                                                                                                   TGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCGCGTGCGCAc                                         <  5:82831‑M1/149‑1 (MQ=255)                                                                                                          accgacgcccagtgagcgggaatccgacggcgatgcaggcgcaGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCGCGTGCGCACCtcgtcg                                  <  7:28666‑M2/106‑1 (MQ=255)                                                                                                             gacgcccagtgagcgggaatccgacggcgatgcaggcgcaGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCGCGTGCGCACCTCGTCGGTc                               <  2:62240‑M2/109‑1 (MQ=255)                                                                                                                     ccGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATc                                                   >  2:230933/1‑121 (MQ=255)                                                                                                                     ccGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATc                                                   <  1:230933/121‑1 (MQ=255)                                                                                                                               ggCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCGCGTGCGCACCTCGTCGGTCACCGCGTCAGCTTCAAc              <  1:335863/148‑1 (MQ=255)                                                                                                                               ggCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCGCGTGCGCACCTCGTCGGTCACCGCGTCAGCTTCAACg             >  8:98912/1‑149 (MQ=255)                                                                                                                                  gTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCGCGTGCGCACCTCGTCGGTCACCGCGTCAGCTTCAACGCTc          <  5:364206/149‑1 (MQ=255)                                                                                                                                           ttCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAATGACACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCGCGTGCGCACCTCGTCGGTCACCGCGTCAGCTTCAACGCTCGAGGCTcc  >  1:274374/1‑149 (MQ=255)                                                                                                                                           ttCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCGCGTGCGCACCTCGTCGGTCACTGCGTCAGCTTc                 <  6:222662/133‑1 (MQ=255)                                                                                                                                           ttCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCGCGTGCGCACCTCGTCGGTCACTGCGTCAGCTTc                 >  5:222662/1‑133 (MQ=255)                                                                                                                                                   caGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCGCGTGCGCACCTCGTCGGTCACCGCGTCAGCTTCAACGCTc          <  3:44852‑M2/130‑1 (MQ=255)                                                                                                                                                   caGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGATGTTTCCAGGGCAAAACGAGCGGCATCGCGTCCGCACCTCGTCGGTCACCGCGTCAGCTTCAAAGCTc          >  4:44852‑M2/3‑132 (MQ=255)                                                                                                                                                    aGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCGCGTGCGCACCTCGTCGGTCa                              >  2:67076‑M2/2‑111 (MQ=255)                                                                                                                                                    aGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCGCGTGCGCACCTCGTCGGTCa                              <  1:67076‑M2/110‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                           CCACGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAAT‑AGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCGCGTGCGCACCTCGTCGGTCACCGCGTCAGCTTCAACGCTCGAGGCTCC  >  NC_002947/3746861‑3747146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.