New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3746953 =	45 (0.850)	6 (0.120)	6/238	NT	14.4%	intergenic (+22/+62)	paoC/kefB‑II	aromatic aldehyde dehydrogenase molybdopterin‑binding subunit/glutathione‑regulated potassium/H+ antiporter
	?	NC_002947	3747009 =	29 (0.590)					intergenic (+78/+6)	paoC/kefB‑II	aromatic aldehyde dehydrogenase molybdopterin‑binding subunit/glutathione‑regulated potassium/H+ antiporter

GGCGAAATCGGCGTCGTCGGGGTGGCAGCCGCGGTGGCCAACGCGGTCTACCATGCCACGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAATAGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCG  >  NC_002947/3746806‑3747098                                                                                                                                                    |                                                                                                                                                  ggCGAAATCGGCGTCGTCGGGGTTGCAGCCGCGGTGGCCAACGCGGTCTACCATGCAACGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCTACAAACTGATGAAAGACAACAGTCAGGTATGAGTAATATCTTTGAATGAGGttt                                                                                                                                                   >  2:335863/1‑148 (MQ=255)    gAAATCGGCGTCGTCGGGGTGGCAGCCGCGGTGGCCAACGCGGTCTACCATGCCACGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTgcgc                                                                                                                                               <  7:406/149‑1 (MQ=255)      aaTCGGCGTCTGCGGGGGGGCAGCCGCGGTGGCCAACGCGGTCTACCATTCCACGGGCAAGCGTGTGAGGGAGTTTCCGAGCACGCTCGACTAACTGCTGAAAGACAACAGTCAGTTATGAGTAATATCTGTGCATGAGGTTTGCGCCt                                                                                                                                             <  5:186155/149‑1 (MQ=255)      aaTCGGCGTCGTCGGGGTGGCAGCCGCGGTGGCCAACGCGGTCTACCATGCCACGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCt                                                                                                                                             <  4:336118/149‑1 (MQ=255)          ggCGTCGTCGGGGTGGCAGCCGCGGTGGCCAACGCGGTCTACCATGCCACGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCa                                                                                                                                          <  6:249238/148‑1 (MQ=255)                  gagctttgaagctgacgcggtgaccgacgaggtgcggacgcgatgccgctcgttttgccctggaaacatccggcggtctatttgccgggcgagcgttggttctgggaaatatcgagcgcattgatccgcctg                                                                                                                                                  >  4:44852‑M1/131‑132 (MQ=255)                  gagcgttgaagctgacgcggtgaccgacgaggtgcgcacgcgatgccgcacgttttgccctggaaacatccggcggtctatttgccgggcgagcgttggttctgggaaatatcgagcgcattgatccgcctg                                                                                                                                                  <  3:44852‑M1/2‑1 (MQ=255)                     ggTGGCAGCCGCGGTGGCCAACGCGGTCTACCATGCCACGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGAt                                                                                                                              <  8:31386/149‑1 (MQ=255)                                  gTGGCCAACGCGGTCTACCATGCCACGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTgg                                                                                                                 <  3:285494/149‑1 (MQ=255)                                  gTGGCCAACGCGGTCTACCATGCCACGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTgg                                                                                                                 <  3:98451/149‑1 (MQ=255)                                      tgaccgacgaggtgcgcacgcgatgccgcacgttttgccctggaaacatccggcggtctatttgccgggcgagcgttggttctgggaaatatcgagcgcattgatccgcct                                                                                                                                                   >  2:67076‑M1/111‑111 (MQ=255)                                      tgaccgacgaggtgcgcacgcgatgccgcacgttttgccctggaaacatccggcggtctatttgccgggcgagcgttggttctgggaaatatcgagcgcattgatccgcct                                                                                                                                                   <  1:67076‑M1/1‑1 (MQ=255)                                       gaccgacgaggtgcgcacgcgatgccgcacgttttgccctggaaacatccggcggtctatttgccgggcgagcgttggttctgggaaatatcgagcgcattgatccgccTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTc                                                                                                            <  2:62240‑M1/40‑1 (MQ=255)                                       cAACGCGGTCTACCATGCCACGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTc                                                                                                                            <  4:81074/133‑1 (MQ=255)                                       cAACGCGGTCTACCATGCCACGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTc                                                                                                                            >  3:81074/1‑133 (MQ=255)                                       cAACGCGGTCTACCATGCCACGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGAGACTGCATCGCAGTCGGATTcc                                                                                                                           >  8:311984/1‑134 (MQ=255)                                       cAACGCGGTCTACAATTCCACGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTcc                                                                                                                           <  7:311984/134‑1 (MQ=255)                                        aaCGCGGTCTACCATGCCACGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCg                                                                                                                                 >  4:204508/1‑127 (MQ=255)                                        aaCGCGGTCTACCATGCCACGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCg                                                                                                                                 <  3:204508/127‑1 (MQ=255)                                          cgcgGTCTACCATGCCACGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGt                                                                                                         >  7:2463/1‑149 (MQ=255)                                          cgacgaggtgcgcacgcgatgccgcacgttttgccctggaaacatccggcggtctatttgccgggcgagcgttggttctgggaaatatcgagcgcattgatccgccTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGt                                                                                                         <  7:28666‑M1/43‑1 (MQ=255)                                                  aCCATGCCACGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTggg                                                                                                                <  3:306459/134‑1 (MQ=255)                                                  aCCATGCCACGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTggg                                                                                                                >  4:306459/1‑134 (MQ=255)                                                    cATGCCACGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTcaggc                                                                                               <  3:151795/149‑1 (MQ=255)                                                     aTGCCACGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTcaggcg                                                                                              >  2:183830/1‑149 (MQ=255)                                                       acgcgatgccgcacgttttgccctggaaacatccggcggtctatttgccgggcgagcgttggttctgggaaatatcgagcgcattgatccgccTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTcaggcgca                                                                                            >  1:62240‑M1/94‑149 (MQ=255)                                                        cgcgatgccgcacgttttgccctggaaacatccggcggtctatttgccgggcgagcgttggttctgggaaatatcgagcgcattgatccgccTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTcaggcgcag                                                                                           >  8:28666‑M1/93‑149 (MQ=255)                                                         cACGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCt                                                                                                                       >  8:231444/1‑120 (MQ=255)                                                         cACGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCt                                                                                                                       <  7:231444/120‑1 (MQ=255)                                                          aCGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTcaggcgcaggc                                                                                         >  8:103041/1‑149 (MQ=255)                                                                   cGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATg                                                                                <  8:2463/149‑1 (MQ=255)                                                                         aGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTc                                                                           >  6:102576/1‑148 (MQ=255)                                                                            gAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGata                                                                       >  5:349892/1‑149 (MQ=255)                                                                                   cGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGt                                                                                                         >  2:29235/1‑108 (MQ=255)                                                                                   cGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCCCCGTCGGATTCCCGCTCACTGGGCGTCGGt                                                                                                         <  1:29235/108‑1 (MQ=255)                                                                                    gATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTcaggcg                                                                                              <  2:268089/118‑1 (MQ=255)                                                                                     aTCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAg                                                               >  5:169627/1‑148 (MQ=255)                                                                                      tCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGaa                                                             <  6:349892/149‑1 (MQ=255)                                                                                          gCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCa                                                                >  1:220560/1‑142 (MQ=255)                                                                                          gCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCa                                                                <  2:220560/142‑1 (MQ=255)                                                                                          gCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCaa                                                         >  4:288769/1‑149 (MQ=255)                                                                                           cTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAAc                                                        <  1:183830/149‑1 (MQ=255)                                                                                            tCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGTGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAAc                                                        >  3:208053/1‑148 (MQ=255)                                                                                                tatttgccgggcgagcgttggttctgggaaatatcgagcgcattgatccgccTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATg                                                                                <  3:228749‑M1/68‑1 (MQ=255)                                                                                                tatttgccgggcgagcgttggttctgggaaatatcgagcgcattgatccgccTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATg                                                                                >  4:228749‑M1/53‑120 (MQ=255)                                                                                                       ctgAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCgg                                              <  3:288769/147‑1 (MQ=255)                                                                                                       ctgAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGc                                             <  6:169627/148‑1 (MQ=255)                                                                                                          aaaGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCaaa                                          >  5:215549/1‑148 (MQ=255)                                                                                                          aaaGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCaaa                                          >  7:327817/1‑148 (MQ=255)                                                                                                                aacaGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAATAGAccg                                   <  7:103041/149‑1 (MQ=255)                                                                                                                   aGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCACCGCTCGCCCGGCAAATAGCccgccg                                >  6:364206/1‑149 (MQ=255)                                                                                                                         gTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAATAGACCGCCGGa                              <  4:289248/145‑1 (MQ=255)                                                                                                                         gTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAATAGACCGCCGGa                              >  3:289248/1‑145 (MQ=255)                                                                                                                               gTAATATCTGTGCATGAGGTTTGTGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAATAGACCGCCGGATGTTTCCAg                     <  4:208053/148‑1 (MQ=255)                                                                                                                                       tgtgCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGGATCAGGCGCAGGCGGATCAATGCGCTCGATATTTCTCAGACCCAACGCTCGCCCGGCAAATAGACCGCCGGATGTTTCCAGGGCAAAACg            >  6:291354/1‑149 (MQ=255)                                                                                                                                             tGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAATAGACCGCCGGAt                             <  2:63135/126‑1 (MQ=255)                                                                                                                                             tGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAATAGACCGCCGGAt                             >  1:63135/1‑126 (MQ=255)                                                                                                                                                 gTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAATAGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATcg  <  6:215549/149‑1 (MQ=255)                                                                                                                                                 gTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAATAGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATcg  <  8:327817/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GGCGAAATCGGCGTCGTCGGGGTGGCAGCCGCGGTGGCCAACGCGGTCTACCATGCCACGGGCAAGCGTGTGAGGGAGTTTCCGATCACGCTCGACAAACTGCTGAAAGACAACAGTCAGGTATGAGTAATATCTGTGCATGAGGTTTGCGCCTGCATCGCCGTCGGATTCCCGCTCACTGGGCGTCGGTGGCTTCAGGCGCAGGCGGATCAATGCGCTCGATATTTCCCAGAACCAACGCTCGCCCGGCAAATAGACCGCCGGATGTTTCCAGGGCAAAACGTGCGGCATCG  >  NC_002947/3746806‑3747098

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.