| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3998804 = | 29 (0.550) | 4 (0.080) | 4/244 | NT | 12.0% | coding (241/684 nt) | PP_3527 | TetR family transcriptional regulator |
| ? | NC_002947 | 3998849 = | 31 (0.610) | coding (196/684 nt) | PP_3527 | TetR family transcriptional regulator | |||||
ATCCTCCAGGCCGCCATCAACGAGTTCGTTCAGCAAGGGCTGGCCGGCGCCCGCGTCGACGCCATCGCCGAACGCACCGCCACTTCCAAGCGCATGATCTACTACTACTTCGGCAGCAAGGAGCAGCTGTATTGCGAGTGCCTGGTGAAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3998954‑3998804‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagtAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGATGGCGGCCTGGAGGATGTCCTCGC > NC_002947/3998849‑3998962 ATCCTCCAGGCCGCCATCAACGAGTTCGTTCAGCAAGGGCTGGCCGGCGCCCGCGTCGACGCCATCGCCGAACGCACCGCCACTTCCAAGCGCATGATCTACTACTACTTCGGCAGCAAGGAGCAGCTGTATTGCGAGTGCCTGGTGAA < 5:217226/149‑1ATCCTCCAGGCCGCCATCAACGAGTTCGTTCAGCAAGGGCTGGCCGGCGCCCGCGTCGACGCCATCGCCGAACGCACCGCCACTTCCAAGCGCATGATCTACTACTACTTCGGCAGCAAGGAGCAGCTGTATTGCGAGTGCCTGGTG > 6:217226/1‑147 CCTCCAGGCCGCCATCAACGAGTTCGTTCAGCAAGGGCTGGCCGGCGCCCGCGTCGACGCCATCGCCGAACGCACCGCCACTTCCAAGCGCATGATCTACTACTACTTCGGCAGCAAGGAGCAGCTGTATTGCGAGTGCCTGGTGAAGT > 6:56616/1‑149 ATGATCTACTACTACTTCGGCAGCAAGGAGCAGCTGTATTGCGAGTGCCTGGTGAAGTTGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGAT > 2:167079/1‑149 TCTACTACTACTTCGGCAGCAAGGAGCAGCTGTATTGCGAGTGCCTGGTGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGATGGCG > 1:315022/1‑149 TACTACTTCGGCAGCAAGGAGCAGCTGTATTGCGAGTGCCTGGTGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGATGGCGGCCTG > 5:233467/1‑149 CAAGGAGCAGCTGTATTGCGAGTGCCTGGTGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGATGGCGGCCTGGAGGATGTCCTCGC < 6:233467/149‑1 ATCCTCCAGGCCGCCATCAACGAGTTCGTTCAGCAAGGGCTGGCCGGCGCCCGCGTCGACGCCATCGCCGAACGCACCGCCACTTCCAAGCGCATGATCTACTACTACTTCGGCAGCAAGGAGCAGCTGTATTGCGAGTGCCTGGTGAAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3998954‑3998804‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagtAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGATGGCGGCCTGGAGGATGTCCTCGC > NC_002947/3998849‑3998962 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |