New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3998804 =	29 (0.550)	4 (0.080)	4/244	NT	12.0%	coding (241/684 nt)	PP_3527	TetR family transcriptional regulator
	?	NC_002947	3998849 =	31 (0.610)					coding (196/684 nt)	PP_3527	TetR family transcriptional regulator

ATGGTGATCGAAGGTGAACTCCACCAGGCGGCGGATCGCCTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGATGGCGGCCTGGAGGATGTCCTCGCGTGTTTTCTCAGGGTTGTTCTT  >  NC_002947/3998703‑3998984                                                                                                                                                   |                                                                                                                                        aTGGTGATCGAAGGTGAACTCCACCAGGCGGCGGATCGCCTGCTCAGCCGGTAACGACTCAAGGTCCAGGCTCTGTTCGGTTTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAagtag                                                                                                                                        >  2:117117/1‑148 (MQ=255)  caggccgccatcaacgagttcgttcagcaagggctggccggcgcccgcgtcgacgccatcgccgaacgcaccgccacttccaagcgcatgatctactactACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAagtagta                                                                                                                                      >  5:233467‑M1/101‑149 (MQ=255)       cgccatcaacgagttcgttcagcaagggctggccggcgcccgcgtcgacgccatcgccgaacgcaccgccacttccaagcgcatgatctactactACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGa                                                                                                                                 >  1:315022‑M1/96‑149 (MQ=255)       aTCGAAGGTGAACTCCACCATGCGGCGGATCGCGTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGa                                                                                                                                 <  6:269318/149‑1 (MQ=255)       aTCGAAGGTGAACTCCACCAGGCGGCGGATCGCCTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAagtagtag                                                                                                                                     >  5:340084/1‑145 (MQ=255)        tCGAAGGTGAACTCCACCAGGCGGCGGATCGCCTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGa                                                                                                                                 <  7:254902/148‑1 (MQ=255)           atcaacgagttcgttcagcaagggctggccggcgcccgcgtcgacgccatcgccgaacgcaccgccacttccaagcgcatgatctactacaACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCAt                                                                                                                             >  2:167079‑M1/92‑149 (MQ=255)                      caccaGGCGGCGGATCGCCTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGaa                                                                                                                   <  6:340084/148‑1 (MQ=255)                      caccaGGCGGCGGATCGCCTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAg                                                                                                                  >  5:167032/1‑149 (MQ=255)                                cggATCGCCTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCg                                                                                                        <  6:167032/149‑1 (MQ=255)                                  gATCGCCTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGtt                                                                                                      >  5:210349/1‑149 (MQ=255)                                       ccTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTg                                                                                                                      <  2:240279/128‑1 (MQ=255)                                       ccTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTg                                                                                                                      >  1:240279/1‑128 (MQ=255)                                            taaGCCGCTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGc                                                                                            >  6:151853/3‑149 (MQ=255)                                                   gTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGAcg                                                                                     >  6:183405/1‑149 (MQ=255)                                                      aCGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCgg                                                                                  <  5:183405/149‑1 (MQ=255)                                                        gACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGgc                                                                                >  5:56616/1‑149 (MQ=255)                                                             caggtccaggCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCgg                                                                           >  4:228546/1‑149 (MQ=255)                                                                gtccaggCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCa                                                                        <  2:321419/149‑1 (MQ=255)                                                                gtccaggCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCa                                                                        <  6:210349/149‑1 (MQ=255)                                                                            ttCGGTTTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTgaa                                                            <  1:117117/149‑1 (MQ=255)                                                                            ttCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCTATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCgg                                                                                  >  2:120324/1‑127 (MQ=255)                                                                                       ggATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGtt                                                  >  8:324616/1‑148 (MQ=255)                                                                                       ggATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTg                                                 <  3:228546/149‑1 (MQ=255)                                                                                         atgatctactactacttcggcagcaaggagcagctgtattgcgagtgcctggtgaagtTGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGAt                                               >  2:167079‑M2/59‑149 (MQ=255)                                                                                         atatCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGAt                                               <  7:324616/149‑1 (MQ=255)                                                                                             tctactactacttcggcagcaaggagcagctgtattgcgagtgcctggtgaagtAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGATggcg                                           >  1:315022‑M2/55‑149 (MQ=255)                                                                                               ccGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGtt                                                                                                      >  4:3098/1‑88 (MQ=255)                                                                                               ccGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTg                                                                 <  2:114084/125‑1 (MQ=255)                                                                                                  tactacttcggcagcaaggagcagctgtattgcgagtgcctggtgaagtAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGATGGCGGCCTg                                      >  5:233467‑M2/50‑149 (MQ=255)                                                                                                      ACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGATGGCGGCCTggagg                                  >  6:56616‑M1/1‑149 (MQ=255)                                                                                                        TTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGATGGCGGCCTGGAGGAt                                <  5:217226‑M1/149‑1 (MQ=255)                                                                                                          CACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGATGGCGGCCTGGAGGAt                                >  6:217226‑M1/1‑147 (MQ=255)                                                                                                             cAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGATGGCGGCCTGGAGGATGTCCt                           >  3:201057/1‑149 (MQ=255)                                                                                                                caaggagcagctgtattgcgagtgcctggtgaagtAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGATGGCGGCCTGGAGGATGTCCTcgc                        <  6:233467‑M2/114‑1 (MQ=255)                                                                                                                  aCTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGATGGCGGCCTGGAGGATGTCCTCGCgt                      <  5:151853/149‑1 (MQ=255)                                                                                                                    tCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGATGGCGGCCTGGAGGAt                                >  7:45197/1‑137 (MQ=255)                                                                                                                    tCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGATGGCGGCCTGGAGGAt                                <  8:45197/137‑1 (MQ=255)                                                                                                                          tACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCTGTCGCCTGCCAGGCCTTGCTGAACGAACTCGTTGATGGCGGCCTGGAGGATGTCCTCGCGTGTTTtct               >  1:112822/1‑148 (MQ=255)                                                                                                                             aGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGATGGCGGCCTGGAGGATGTCCTCGAGTGTTTTCTCAgg           <  4:201057/149‑1 (MQ=255)                                                                                                                                     cTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGATGGCGGCCTGGAGGATGTCCTCGCGTGTTTTCTCAGGGTTGTTCt   >  8:286344/1‑149 (MQ=255)                                                                                                                                     cTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGATGGCGGCCTGGAGGATGTCCTCGCGTGGTTTCTCACGGTTGTTCt   >  4:266739/1‑149 (MQ=255)                                                                                                                                      ttGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGATGGCGGCCTGGAGGATGTCCTCGCGTGTTTTCTCAGGGTTGTTCtt  >  6:224277/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                        ATGGTGATCGAAGGTGAACTCCACCAGGCGGCGGATCGCCTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGATGGCGGCCTGGAGGATGTCCTCGCGTGTTTTCTCAGGGTTGTTCTT  >  NC_002947/3998703‑3998984

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.