New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3998804 =	29 (0.550)	4 (0.080)	4/244	NT	12.0%	coding (241/684 nt)	PP_3527	TetR family transcriptional regulator
	?	NC_002947	3998849 =	31 (0.610)					coding (196/684 nt)	PP_3527	TetR family transcriptional regulator

CGCACGAAATCGACGTTGCGGTCATGGTGATCGAAGGTGAACTCCACCAGGCGGCGGATCGCCTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGATGGCGGCCTGGAGG  >  NC_002947/3998680‑3998952                                                                                                                             |                                                                                                                                                     cgcACGAAATCGACGTTGCGGTCATGGTGATCGAAGGTGAACTCCACCAGGCGGCGGATCGCCTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAg                                                                                                                              <  6:339402/149‑1 (MQ=255)    aCGAAATCGACGTTGCGGTCATGGTGATCGAAGGTGAACTCCACCAGGCGGCGGATCGCCTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATAc                                                                                                                                <  8:223753/144‑1 (MQ=255)    aCGAAATCGACGTTGCGGTCATGGTGATCGAAGGTGAACTCCACCAGGCGGCGGATCGCCTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATAc                                                                                                                                >  7:223753/1‑144 (MQ=255)           gcgaggacatcctccaggccgccatcaacgagttcgttcagcaagggctggccggcgcccgcgtcgacgccatcgccgaacgcaccgccacttccaagcgcatgatctactactACTTCACCAGGCACTCGCAATACAGCTGCTCCTtg                                                                                                                    <  6:233467‑M1/35‑1 (MQ=255)                        aTGGTGATCGAAGGTGAACTCCACCAGGCGGCGGATCGCCTGCTCAGCCGGTAACGACTCAAGGTCCAGGCTCTGTTCGGTTTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAagtag                                                                                                        >  2:117117/1‑148 (MQ=255)                         caggccgccatcaacgagttcgttcagcaagggctggccggcgcccgcgtcgacgccatcgccgaacgcaccgccacttccaagcgcatgatctactactACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAagtagta                                                                                                      >  5:233467‑M1/101‑149 (MQ=255)                              cgccatcaacgagttcgttcagcaagggctggccggcgcccgcgtcgacgccatcgccgaacgcaccgccacttccaagcgcatgatctactactACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGa                                                                                                 >  1:315022‑M1/96‑149 (MQ=255)                              aTCGAAGGTGAACTCCACCATGCGGCGGATCGCGTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGa                                                                                                 <  6:269318/149‑1 (MQ=255)                              aTCGAAGGTGAACTCCACCAGGCGGCGGATCGCCTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAagtagtag                                                                                                     >  5:340084/1‑145 (MQ=255)                               tCGAAGGTGAACTCCACCAGGCGGCGGATCGCCTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGa                                                                                                 <  7:254902/148‑1 (MQ=255)                                  atcaacgagttcgttcagcaagggctggccggcgcccgcgtcgacgccatcgccgaacgcaccgccacttccaagcgcatgatctactacaACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCAt                                                                                             >  2:167079‑M1/92‑149 (MQ=255)                                             caccaGGCGGCGGATCGCCTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGaa                                                                                   <  6:340084/148‑1 (MQ=255)                                             caccaGGCGGCGGATCGCCTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAg                                                                                  >  5:167032/1‑149 (MQ=255)                                                       cggATCGCCTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCg                                                                        <  6:167032/149‑1 (MQ=255)                                                         gATCGCCTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGtt                                                                      >  5:210349/1‑149 (MQ=255)                                                              ccTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTg                                                                                      <  2:240279/128‑1 (MQ=255)                                                              ccTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTg                                                                                      >  1:240279/1‑128 (MQ=255)                                                                   taaGCCGCTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGc                                                            >  6:151853/3‑149 (MQ=255)                                                                          gTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGAcg                                                     >  6:183405/1‑149 (MQ=255)                                                                             aCGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATa                                                                                                                                 <  7:197895/70‑1 (MQ=255)                                                                             aCGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATa                                                                                                                                 >  8:197895/1‑70 (MQ=255)                                                                             aCGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCgg                                                  <  5:183405/149‑1 (MQ=255)                                                                               gACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGgc                                                >  5:56616/1‑149 (MQ=255)                                                                                    caggtccaggCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCgg                                           >  4:228546/1‑149 (MQ=255)                                                                                       gtccaggCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCa                                        <  6:210349/149‑1 (MQ=255)                                                                                       gtccaggCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCa                                        <  2:321419/149‑1 (MQ=255)                                                                                                   ttCGGTTTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTgaa                            <  1:117117/149‑1 (MQ=255)                                                                                                   ttCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCTATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCgg                                                  >  2:120324/1‑127 (MQ=255)                                                                                                              ggATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGtt                  >  8:324616/1‑148 (MQ=255)                                                                                                              ggATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTg                 <  3:228546/149‑1 (MQ=255)                                                                                                                atatCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGAt               <  7:324616/149‑1 (MQ=255)                                                                                                                      ccGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGtt                                                                      >  4:3098/1‑88 (MQ=255)                                                                                                                      ccGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTg                                 <  2:114084/125‑1 (MQ=255)                                                                                                                             ACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGATGGCGGCCTggagg  >  6:56616‑M1/1‑149 (MQ=255)                                                                                                                             |                                                                                                                                                     CGCACGAAATCGACGTTGCGGTCATGGTGATCGAAGGTGAACTCCACCAGGCGGCGGATCGCCTGCTCAGCCGGTAACGACTCCAGGTCCAGGCTCTGTTCGGTCTTGCGGATATCCCCGTACAACTTCACCAGGCACTCGCAATACAGCTGCTCCTTGCTGCCGAAGTAGTAGTAGATCATGCGCTTGGAAGTGGCGGTGCGTTCGGCGATGGCGTCGACGCGGGCGCCGGCCAGCCCTTGCTGAACGAACTCGTTGATGGCGGCCTGGAGG  >  NC_002947/3998680‑3998952

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.