New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4290319	30 (0.570)	3 (0.060)	3/248	NT	10.1%	coding (2268/3468 nt)	PP_3761	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4290350	24 (0.470)					coding (2237/3468 nt)	PP_3761	two‑component system sensor histidine kinase/response regulator

CACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4290214‑4290319 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcGCCCGGCGCCGGCCTTTGCCGACGACCGCGAGCGGGCCCCTTTCGATACCCGCTGCATTCTGGTAATCGAAGACGAGCCCAACTTTGCCCGCATCCTCTTCGACCTGGCCCATGAGCTGGGCTATAGCTGCCTGGTGGCCCATGGC  <  NC_002947/4290350‑4290205                                                                                                                                                                                                                                                              CACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGGCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCGCCCGGCGCCGGCCTTTGCCGACGACCGCGAGCGGGCCCCTTT                                                                                                         <  8:326394/149‑1                                AGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCGCCCGGCGCCGGCCTTTGCCGACGACCGCGAGCGG                                                                                                                 >  7:48754/1‑110                                AGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCGCCCGGCGCCGGCCTTTGCCGACGACCGCGAGCGG                                                                                                                 <  8:48754/110‑1                                                                                                        CGCGCCCGGCGCCGGCCTTTGCCGACGACCGCGAGCGGGCCCCTTTCGATACCCGCTGCATTCTGGTAATCGAAGACGAGCCCAACTTTGCCCGCATCCTCTTCGACCTGGCCCATGAGCTGGGCTATAGCTGCCTGGTGGCCCATGGC  >  3:244383/1‑149                                                                                                                                                                                                                                                              CACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4290214‑4290319 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcGCCCGGCGCCGGCCTTTGCCGACGACCGCGAGCGGGCCCCTTTCGATACCCGCTGCATTCTGGTAATCGAAGACGAGCCCAACTTTGCCCGCATCCTCTTCGACCTGGCCCATGAGCTGGGCTATAGCTGCCTGGTGGCCCATGGC  <  NC_002947/4290350‑4290205

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.