New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4290319	30 (0.570)	3 (0.060)	3/248	NT	10.1%	coding (2268/3468 nt)	PP_3761	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4290350	24 (0.470)					coding (2237/3468 nt)	PP_3761	two‑component system sensor histidine kinase/response regulator

GGCTGCCAGCTCGAAGCCTTCGTCGGCGCCATGGGCCACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTGCGGTTCGACGTCTTCGGCCTCGGCAGCATAGCGCTCCGGCAGAAT  >  NC_002947/4290178‑4290465                                                                                                                                              |                                                                                                                                                   ggCTGCCAGCTCGAAGCCTTCGTCGGCGCCATGGGCCACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTcgcg                                                                                                                                               <  5:48806/147‑1 (MQ=255)  gCTGCCAGCTCGAAGCCTTCGTCGGCGCCATGGGCCACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGgtc                                                                                                                                            <  4:277556/149‑1 (MQ=255)      ccAGCTCGAAGCCTTCGTCGGCGCCATGGGCCACCAGGCGGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGtcgtcg                                                                                                                                        >  2:198574/1‑149 (MQ=255)       cAGCTCGAAGCCTTCGTCGGCGCCATGGGCCACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCgg                                                                                                                                       >  5:308105/1‑149 (MQ=255)       cAGCTCGAAGCCTTCGTCGGCGCCATGGGCCACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCgg                                                                                                                                       >  2:341110/1‑149 (MQ=255)                  cTTCGTCGGCGTCATGGGACACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGgtcgtc                                                                                                                                         <  8:237518/136‑1 (MQ=255)                  cTTCGTCGGCGCCATGGGCCACCAGGCAGCTATAGCCCAGCTCAAGGGCCAGGTCGAAGAGGATGCCGGCAAAGTTGAGCTCGTCTTCGATTACCAGAATGCAGCCGGTATCGAAAGGGGCCCGCTCGCGGtcgtcgagatccg                                                                                                                                 >  7:237518/1‑137 (MQ=255)                            gcCATGGGCCACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCgcg                                                                                                                  >  3:244383‑M2/1‑146 (MQ=255)                              cATGGGCCACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGt                                                                                                                 >  4:64828/1‑148 (MQ=255)                                     caccaGGCAGCTATAGCCCAGCTCATGGGCCAGGGCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCgcccggcgccggcctttgccgacgaccgcgagcgggccccttt                                                                                                         <  8:326394‑M1/149‑44 (MQ=255)                                         aGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGACGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCggcggc                                                                                                     <  5:330997/149‑1 (MQ=255)                                           gCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGt                                                                                                                 >  2:134458/1‑135 (MQ=255)                                           gCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGt                                                                                                                 <  1:134458/135‑1 (MQ=255)                                               cTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACa                                                                                                             <  4:326990/135‑1 (MQ=255)                                               cTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACa                                                                                                             >  3:326990/1‑135 (MQ=255)                                                 ataGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGt                                                                                                                 >  6:154884/1‑129 (MQ=255)                                                 ataGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGt                                                                                                                 <  5:154884/129‑1 (MQ=255)                                                             aTGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAg                                                                                 >  1:66573/1‑149 (MQ=255)                                                                  ccAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAggcggc                                                                            <  2:66573/149‑1 (MQ=255)                                                                    aGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCgcccggcgccggcctttgccgacgaccgcgagcgg                                                                                                                 >  7:48754‑M1/1‑75 (MQ=255)                                                                    aGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCgcccggcgccggcctttgccgacgaccgcgagcgg                                                                                                                 <  8:48754‑M1/110‑36 (MQ=255)                                                                     ggTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAAc                                                                         <  6:308105/149‑1 (MQ=255)                                                                      gTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAgcg                                                                                                <  3:216272/125‑1 (MQ=255)                                                                      gTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAgcg                                                                                                >  4:216272/1‑125 (MQ=255)                                                                                    gggCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAgg                                                                                >  1:126581/1‑127 (MQ=255)                                                                                    gggCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAgg                                                                                <  2:126581/127‑1 (MQ=255)                                                                                    gggCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCggg                                                          >  2:281604/1‑149 (MQ=255)                                                                                        aaaGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCa                                                      <  1:341110/149‑1 (MQ=255)                                                                                                gCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTGc                                              <  1:198574/149‑1 (MQ=255)                                                                                                  tCGTCTTCGATTGCCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTGCgg                                            >  4:248426/1‑149 (MQ=255)                                                                                                         cGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTGCGGTTCGACg                                     >  5:91319/1‑149 (MQ=255)                                                                                                                    aTGCAGCGGGTATCGAAAGGGGCCCGCACGCGGTCGTCGGCAAAGCCCGGCGCCGGGCGCGTGACAGCGGCGGCCCGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTGCGGTTCGACGTCTTCGGCCTc                          >  7:123567/1‑149 (MQ=255)                                                                                                                     tGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTGCGGTTCGACGTCTTCGGCCTCg                         <  1:281604/149‑1 (MQ=255)                                                                                                                             gTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTGCGGTTCGACGTCTTCGGCCTCGGCAGCATa                 <  6:91319/149‑1 (MQ=255)                                                                                                                             gTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTGCGGTTCGACGTCTTCGGCCTCGGCAGCATa                 <  3:64828/149‑1 (MQ=255)                                                                                                                                   aaaGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCgcgggcccctttcgatacccgctgcattctggtaatcgaagacgagcccaactttgcccgcatcctcttcgccctggcccatgagctgggctatagctgcctggtg           <  8:326394‑M2/149‑107 (MQ=255)                                                                                                                                          cccGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTACGGTTCGACGTCTTCGGCCTCGGCAGCATAGCGCTCCgg        <  2:173796/145‑1 (MQ=255)                                                                                                                                          cccGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTACGGTTCGACGTCTTCGGCCTCGGCAGCATAGCGCTCCgg        >  1:173796/1‑145 (MQ=255)                                                                                                                                           ccGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCgcgggcccctttcgatacccgctgcattctggtaatcgaagacgagcccaactttgcccgcatcctcttcgacct                                          >  7:48754‑M2/1‑35 (MQ=255)                                                                                                                                           ccGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCgcgggcccctttcgatacccgctgcattctggtaatcgaagacgagcccaactttgcccgcatcctcttcgacct                                          <  8:48754‑M2/110‑76 (MQ=255)                                                                                                                                            cgcgcccggcgccggcctttgccgacgaccgcgagcgggcccctttcgatacccgctgcattctggtaatcgaagacgagcccaactttgcccgcatcctcttcgacctggcccatgagctgggctatagctgcctggtggcccatggc  >  3:244383‑M1/1‑3 (MQ=255)                                                                                                                                              |                                                                                                                                                   GGCTGCCAGCTCGAAGCCTTCGTCGGCGCCATGGGCCACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTGCGGTTCGACGTCTTCGGCCTCGGCAGCATAGCGCTCCGGCAGAAT  >  NC_002947/4290178‑4290465

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.