New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4290319	30 (0.570)	3 (0.060)	3/248	NT	10.1%	coding (2268/3468 nt)	PP_3761	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4290350	24 (0.470)					coding (2237/3468 nt)	PP_3761	two‑component system sensor histidine kinase/response regulator

GCCATGGGCCACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTGCGGTTCGACGTCTTCGGCCTCGGCAGCATAGCGCTCCGGCAGAATCAGGCTGAACACGCTGCCTTGCCCGGGGC  >  NC_002947/4290205‑4290494                                                                                                                                                  |                                                                                                                                                 gcCATGGGCCACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCgcg                                                                                                                                               >  3:244383‑M2/1‑146 (MQ=255)   cATGGGCCACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGt                                                                                                                                              >  4:64828/1‑148 (MQ=255)              aGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGACGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCggcggc                                                                                                                                  <  5:330997/149‑1 (MQ=255)                gCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGt                                                                                                                                              <  1:134458/135‑1 (MQ=255)                gCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGt                                                                                                                                              >  2:134458/1‑135 (MQ=255)                    cTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACa                                                                                                                                          <  4:326990/135‑1 (MQ=255)                    cTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACa                                                                                                                                          >  3:326990/1‑135 (MQ=255)                      ataGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGt                                                                                                                                              >  6:154884/1‑129 (MQ=255)                      ataGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGt                                                                                                                                              <  5:154884/129‑1 (MQ=255)                                  aTGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAg                                                                                                              >  1:66573/1‑149 (MQ=255)                                       ccAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAggcggc                                                                                                         <  2:66573/149‑1 (MQ=255)                                          ggTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAAc                                                                                                      <  6:308105/149‑1 (MQ=255)                                           gTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAgcg                                                                                                                             <  3:216272/125‑1 (MQ=255)                                           gTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAgcg                                                                                                                             >  4:216272/1‑125 (MQ=255)                                                         gggCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAgg                                                                                                             <  2:126581/127‑1 (MQ=255)                                                         gggCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAgg                                                                                                             >  1:126581/1‑127 (MQ=255)                                                         gggCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCggg                                                                                       >  2:281604/1‑149 (MQ=255)                                                             aaaGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCa                                                                                   <  1:341110/149‑1 (MQ=255)                                                                     gCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTGc                                                                           <  1:198574/149‑1 (MQ=255)                                                                       tCGTCTTCGATTGCCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTGCgg                                                                         >  4:248426/1‑149 (MQ=255)                                                                              cGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTGCGGTTCGACg                                                                  >  5:91319/1‑149 (MQ=255)                                                                                         aTGCAGCGGGTATCGAAAGGGGCCCGCACGCGGTCGTCGGCAAAGCCCGGCGCCGGGCGCGTGACAGCGGCGGCCCGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTGCGGTTCGACGTCTTCGGCCTc                                                       >  7:123567/1‑149 (MQ=255)                                                                                          tGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTGCGGTTCGACGTCTTCGGCCTCg                                                      <  1:281604/149‑1 (MQ=255)                                                                                                  gTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTGCGGTTCGACGTCTTCGGCCTCGGCAGCATa                                              <  3:64828/149‑1 (MQ=255)                                                                                                  gTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTGCGGTTCGACGTCTTCGGCCTCGGCAGCATa                                              <  6:91319/149‑1 (MQ=255)                                                                                                        aaaGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCgcgggcccctttcgatacccgctgcattctggtaatcgaagacgagcccaactttgcccgcatcctcttcgccctggcccatgagctgggctatagctgcctggtg                                        <  8:326394‑M2/149‑107 (MQ=255)                                                                                                               cccGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTACGGTTCGACGTCTTCGGCCTCGGCAGCATAGCGCTCCgg                                     <  2:173796/145‑1 (MQ=255)                                                                                                               cccGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTACGGTTCGACGTCTTCGGCCTCGGCAGCATAGCGCTCCgg                                     >  1:173796/1‑145 (MQ=255)                                                                                                                ccGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCgcgggcccctttcgatacccgctgcattctggtaatcgaagacgagcccaactttgcccgcatcctcttcgacct                                                                       >  7:48754‑M2/1‑35 (MQ=255)                                                                                                                ccGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCgcgggcccctttcgatacccgctgcattctggtaatcgaagacgagcccaactttgcccgcatcctcttcgacct                                                                       <  8:48754‑M2/110‑76 (MQ=255)                                                                                                                                gCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTGCGGTTCGACGTCTTCGGCCTCGGCAGCATAGCGCTCCGGCAGAATCAGGCTGAACACGCt                <  3:248426/149‑1 (MQ=255)                                                                                                                                 cAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTGCGGTTCGACGTCTTCGGCCTCGGCAGCATAGCGCTCCGGCAGAATCAGGCTGAACACGCTg               >  7:32000/1‑149 (MQ=255)                                                                                                                                      gCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTGCGGTTCGACGTCTTCGGCCTCGGCAGCATAGCGCTCCGGCAGAATCAGGCTGAACACGCTGc              >  7:331802/1‑145 (MQ=255)                                                                                                                                      gCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTGCGGTTCGACGTCTTCGGCCTCGGCAGCATAGCGCTCCGGCAGAATCAGGCTGAACACGCTGc              <  8:331802/145‑1 (MQ=255)                                                                                                                                           cgcCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTGCGGTGCGACGGCTTCGGCCTCGGCAGCATAGCGCTCCGGCAGAATCAGGCTGAACACGCTGCCTTGCCCgg     <  8:123567/149‑1 (MQ=255)                                                                                                                                              cGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTGCGGTTCGACGTCTTCGGCCTCGGCAGCATAGCGCTCCGGCAGAATCAGGATGAACACGCTCCCTTGCCCTGGgc  >  8:289147/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                 GCCATGGGCCACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGCGGGTATCGAAAGGGGCCCGCTCGCGGTCGTCGGCAAAGGCCGGCGCCGGGCGCGTGACAGCGGCGGCCAGCGGCGCTTGCGGTGCAGGCGGCAACGCATCGACGGCCGGGCGCAGGCTTTGCGGTTCGACGTCTTCGGCCTCGGCAGCATAGCGCTCCGGCAGAATCAGGCTGAACACGCTGCCTTGCCCGGGGC  >  NC_002947/4290205‑4290494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.