New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4364240 =	60 (1.140)	4 (0.080)	4/246	NT	7.3%	intergenic (+17/‑260)	PP_3840/PP_5635	hypothetical protein/hypothetical protein
	?	NC_002947	4364278 =	44 (0.860)					intergenic (+55/‑222)	PP_3840/PP_5635	hypothetical protein/hypothetical protein

TTTGCTCATCAAATATTGAAATGTTCGCAGTCTAGGGTTGGGCTCAAGCCAATTCCACCATCGAGGGCGTCAGGAAATGGATTATTCCAGCATGGTTGAATCGTTGGACAAGATGCTGAAGGCAACGGCTGCAGGTAAGGCCTGCCTCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4364391‑4364240 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTGCGAACATTTCAATATTTGATGAGCAAACCTGGAAATATCACTCATCCTTCATGCTGAAGA  >  NC_002947/4364278‑4364424                                                                                                                                                                                                                                                                                                             TTTGCTCATCAAATATTGAAATGTTCGCAGTCTAGGGTTGGGCTCAAGCCAATTCCACCATCGAGGGCGTCAGGAAATGGATTATTCCAGCATGGTTGAATCGTTGGACAAGATGCTGAAGGCAACGGCTGCAGGTAAGGCCTGCCTCC                                                                                                                                                        <  6:239845/149‑1                                                                                                            ACAAGATGCTGAAGGCAACGGCTGCAGGTAAGGCCTGCCTCCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTGCGAACATTTCA                                                   <  1:14550/143‑1                                                                                                            ACAAGATGCTGAAGGCAACGGCTGCAGGTAAGGCCTGCCTCCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTGCGAACATTTCA                                                   >  2:14550/1‑143                                                                                                              AAGATGCTGAAGGCAACGGCTGCAGGTAAGGCCTGCCTCCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTG                                                              <  3:228408/130‑1                                                                                                              AAGATGCTGAAGGCAACGGCTGCAGGTAAGGCCTGCCTCCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTG                                                              >  4:228408/1‑130                                                                                                                                                       GCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTGCGAACATTTCAATATTTGATGAGCAAACCTGGAAATATCACTCATCCTTCATGCTGAAGA  <  7:152384/149‑1                                                                                                                                                        CATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTGCGAACATTTCAATATTTGATGAGCAAACCTGGAAATATCACTCATCCTTCAT          <  5:105714/140‑1                                                                                                                                                        CATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTGCGAACATTTCAATATTTGATGAGCAAACCTGGAAATATCACTCATCCTTCAT          >  6:105714/1‑140                                                                                                                                                                                                                                                                                                             TTTGCTCATCAAATATTGAAATGTTCGCAGTCTAGGGTTGGGCTCAAGCCAATTCCACCATCGAGGGCGTCAGGAAATGGATTATTCCAGCATGGTTGAATCGTTGGACAAGATGCTGAAGGCAACGGCTGCAGGTAAGGCCTGCCTCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4364391‑4364240 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTGCGAACATTTCAATATTTGATGAGCAAACCTGGAAATATCACTCATCCTTCATGCTGAAGA  >  NC_002947/4364278‑4364424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.