New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4364240 =	60 (1.140)	4 (0.080)	4/246	NT	7.3%	intergenic (+17/‑260)	PP_3840/PP_5635	hypothetical protein/hypothetical protein
	?	NC_002947	4364278 =	44 (0.860)					intergenic (+55/‑222)	PP_3840/PP_5635	hypothetical protein/hypothetical protein

AAGTTCGACCGTGGACTCATGCTTTGGATCAAGAGTGGTACCCCGTCAACCATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTGCGAACATTTCAATATTTGATGAGCAAACCTGGAAATATCACTCATCCTTCATGCTGAAGA  >  NC_002947/4364131‑4364424                                                                                                                                                    |                                                                                                                                                   aaGTTCGACCGTGGACTCATGCTTTGGATCAAGAGTGGTACCCCGTCAACCATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCAt                                                                                                                                                   <  2:320112/149‑1 (MQ=255)     tCGACCGTGGACTCATGCTTTGGATCAAGAGTGGTACCCCGTCAACCATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCtt                                                                                                                                                <  5:289959/148‑1 (MQ=255)       gACCGTGGACTCATGCTTTGGATCAAGAGTGGTACCCCGTCAACCATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGt                                                                                                                                              <  2:39940/148‑1 (MQ=255)            tgaaatgttcgcagtctagggttgggctcaagccaattccaccatcgagggcgtcaggaaatggattattccagcatggttgaatcgttggacaagatGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGt                                                                                                                                              <  1:14550‑M1/45‑1 (MQ=255)            tgaaatgttcgcagtctagggttgggctcaagccaattccaccatcgagggcgtcaggaaatggattattccagcatggttgaatcgttggacaagatGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGt                                                                                                                                              >  2:14550‑M1/99‑143 (MQ=255)                 tCATGCTTTGGATCAAGAGTGGTACCCCGTCAACCATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTc                                                                                                                                    >  6:273447/1‑148 (MQ=255)                 tCATGCTTTGGATCAAGAGTGGTACCCCGTCAACCATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTc                                                                                                                                    >  3:156385/1‑148 (MQ=255)                   aTGCTTTGGATCAAGAGTGGTACCCCGTCAACCATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAAc                                                                                                                                 >  7:11433/1‑149 (MQ=255)                    tGCTTTGGATCAAGAGTGGTACCCCGTCAACCATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAAc                                                                                                                                 >  6:248968/1‑148 (MQ=255)                       cagtctagggttgggctcaagccaattccaccatcgagggcgtcaggaaatggattattccagcatggttgaatcgttggacaagatGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCtt                                                                                                                                                >  4:228408‑M1/88‑130 (MQ=255)                       cagtctagggttgggctcaagccaattccaccatcgagggcgtcaggaaatggattattccagcatggttgaatcgttggacaagatGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCtt                                                                                                                                                <  3:228408‑M1/43‑1 (MQ=255)                          ggATCAAGAGTGGTACCCCGTCAACCATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTg                                                                                                                          >  6:170007/1‑149 (MQ=255)                          ggATCAAGAGTGGTACCCCGTCAACCATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTg                                                                                                                          >  4:41227/1‑149 (MQ=255)                           gATCAAGAGTGGTACCCCGTCAACCATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTg                                                                                                                          <  5:273447/148‑1 (MQ=255)                               aaGAGTGGTACCCCGTCAACCATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGaat                                                                                                                      <  6:39679/148‑1 (MQ=255)                                 gagTGGTACCCCGTCAACCATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGaataat                                                                                                                   <  6:118297/149‑1 (MQ=255)                                 gagTGGTACCCCGTCAACCATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGaataat                                                                                                                   >  6:343595/1‑149 (MQ=255)                                      gTACCCCGTCAACCATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCAtt                                                                                                              <  2:103326/149‑1 (MQ=255)                                      gTACCCCGTCAACCATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCAt                                                                                                               <  3:41227/148‑1 (MQ=255)                                       tACCCCGTCAACCATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCAttt                                                                                                             <  5:248968/149‑1 (MQ=255)                                         ccccGTCAACCATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTcc                                                                                                           <  4:156385/149‑1 (MQ=255)                                         ccccGTCAACCATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTc                                                                                                            >  2:120387/1‑148 (MQ=255)                                         ccccGTCAACCATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTc                                                                                                            <  1:120387/148‑1 (MQ=255)                                         ccccGTCAACCATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCATACCTGCAGCAATAACCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTcc                                                                                                           >  1:285623/1‑149 (MQ=255)                                                aaCCATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGc                                                                                                                            <  3:302336/125‑1 (MQ=255)                                                aaCCATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGc                                                                                                                            >  4:302336/1‑125 (MQ=255)                                                  ccATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCt                                                                                                  <  5:343595/149‑1 (MQ=255)                                                       ggTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGAtg                                                                                             <  7:94084/149‑1 (MQ=255)                                                        gTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGAtgg                                                                                            >  5:54133/1‑149 (MQ=255)                                                           aCGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGAtggtg                                                                                          <  6:54133/148‑1 (MQ=255)                                                                   gACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCt                                                                                 <  5:170007/149‑1 (MQ=255)                                                                      gAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGa                                                                              <  8:11433/149‑1 (MQ=255)                                                                             tACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCaa                                                                        >  3:13369/1‑148 (MQ=255)                                                                                ggAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTc                                                                                                            >  2:217125/1‑109 (MQ=255)                                                                                ggAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTc                                                                                                            <  1:217125/109‑1 (MQ=255)                                                                                ggAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCt                                                                    <  6:337923/149‑1 (MQ=255)                                                                                 gAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTa                                                                   <  4:13369/149‑1 (MQ=255)                                                                                      aTGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTgg                                                                                   >  4:63356/1‑128 (MQ=255)                                                                                      aTGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTgg                                                                                   <  3:63356/128‑1 (MQ=255)                                                                                                       tCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTGCGAACATTTCAATAtt                                              <  2:285623/148‑1 (MQ=255)                                                                                                       tCTGACGACTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCGATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGa                                                                              <  1:156705/116‑1 (MQ=255)                                                                                                       tCTGACGACTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGa                                                                              >  2:156705/1‑116 (MQ=255)                                                                                                       acaagatgctgaaggcaacggctgcaggtaaggcctgcctccagcATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTGCGAACATTTCa                                                   <  1:14550‑M2/98‑1 (MQ=255)                                                                                                       acaagatgctgaaggcaacggctgcaggtaaggcctgcctccagcATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTGCGAACATTTCa                                                   >  2:14550‑M2/46‑143 (MQ=255)                                                                                                         tGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTGCGAACATTTCAATATTtga                                           >  2:177317/1‑149 (MQ=255)                                                                                                         aagatgctgaaggcaacggctgcaggtaaggcctgcctccagcATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTg                                                              >  4:228408‑M2/44‑130 (MQ=255)                                                                                                         aagatgctgaaggcaacggctgcaggtaaggcctgcctccagcATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTg                                                              <  3:228408‑M2/87‑1 (MQ=255)                                                                                                           aCGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCtt                                                                                <  6:256285/110‑1 (MQ=255)                                                                                                           aCGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTGCGAACATTTCAATATTtgat                                          <  6:109132/148‑1 (MQ=255)                                                                                                           aCGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTGCGAACATTTCAATATTtgat                                          >  5:109132/1‑148 (MQ=255)                                                                                                                 GGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTGCGAACATTTCAATATTTGATGAGCaaa                                   <  6:239845‑M1/149‑1 (MQ=255)                                                                                                                  gAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTGCGAACATTTCAATATTTGATGAGCAAAc                                  >  5:222478/1‑149 (MQ=255)                                                                                                                              aCCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTGCGAACATTTCAATATTTGATGAGCAAACCTGGAAATATCa                      >  8:152384/1‑149 (MQ=255)                                                                                                                               ccTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTGCGAACATTTCAATATTTGATGAGCAAACCTGGAAATATCa                      <  6:222478/148‑1 (MQ=255)                                                                                                                                     gCCGTTGCCTTCAGCATCTTGTCCAACGATTCAAACATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTTGAATTGGCTTGAGCCCAACCCTAGACTGCGAACATTTCAATATTTGATGAGCAAACCTGGAAATATCACTCATcc               <  5:239845/149‑1 (MQ=255)                                                                                                                                                  gcATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTGCGAACATTTCAATATTTGATGAGCAAACCTGGAAATATCACTCATCCTTCATGCTGAAGa  <  7:152384‑M2/147‑1 (MQ=255)                                                                                                                                                   cATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTGCGAACATTTCAATATTTGATGAGCAAACCTGGAAATATCACTCATCCTTCAt          <  5:105714‑M2/139‑1 (MQ=255)                                                                                                                                                   cATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTGCGAACATTTCAATATTTGATGAGCAAACCTGGAAATATCACTCATCCTTCAt          >  6:105714‑M2/2‑140 (MQ=255)                                                                                                                                                    |                                                                                                                                                   AAGTTCGACCGTGGACTCATGCTTTGGATCAAGAGTGGTACCCCGTCAACCATGGGTGACGTCGCGGACGAATGGCTACGGAGGTATGGGTGAAGCTCTGTATCTGACGGCTGGAGGCAGGCCTTACCTGCAGCCGTTGCCTTCAGCATCTTGTCCAACGATTCAACCATGCTGGAATAATCCATTTCCTGACGCCCTCGATGGTGGAATTGGCTTGAGCCCAACCCTAGACTGCGAACATTTCAATATTTGATGAGCAAACCTGGAAATATCACTCATCCTTCATGCTGAAGA  >  NC_002947/4364131‑4364424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.