New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4377989 =	56 (1.060)	3 (0.060)	3/242	NT	5.7%	coding (188/531 nt)	PP_5638	hypothetical protein
	?	NC_002947	4378032 =	46 (0.910)					coding (145/531 nt)	PP_5638	hypothetical protein

GTAATCGGCGAGCGTGGTGCCCGTCAGGAAGAACAGCGACGCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4378035‑4377989 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgaTTACCTCGGCTAGGCGATCACCGCTGTCTCGCTGCGCTGACGC‑CTGGCCGGCAACCGCACGCTCCACCGACCGGCCATGCTGGTAGGCGCCCCAGTAGGACGCCACCACAAGGACCAAGGCTGCGGCCCTGACCCAGCCATTCACGCC  >  NC_002947/4378032‑4378179                                                                                                                                                                                                      GTAATCGGCGAGCGTGGTGCCCGTCAGGAAGAACAGCGACGCGCCGATTACATCGGCTAGGCGATCACCGCTGTCTCGCTGAGCTGACGC‑CTGGCCGGCAACCGCACGCTCCACCGACCGGCCATGCTGGTAGGCGCCCCAGTAGGACG                                                >  5:207502/1‑149   AATCGGCGAGCGTGGTGCCCGTCAGGAAGAACAGCGACGCGCCGATTACCTCGGCTAGGCGATCACCGCTGTCTCGCTGCGCTGACGC‑CTGGCCGG                                                                                                   <  5:329860/96‑1   AATCGGCGAGCGTGGTGCCCGTCAGGAAGAACAGCGACGCGCCGATTACCTCGGCTAGGCGATCACCGCTGTCTCGCTGCGCTGACGC‑CTGGCCGG                                                                                                   >  6:329860/1‑96                                          CGCCGATTACCTCGGCTAGGCGATCACCGCTGTCTCGCTGCGCTGACGC‑CTGGCCGGCAACCGCACGCTCCACCGACCGGCCATGCTGGTAGGCGCCCCAGTAGGACGCCACCACAAGGACCAAGGCTGCGGCCCTGACCCAG             <  3:24789/143‑1                                          CGCCGATTACCTCGGCTAGGCGATCACCGCTGTCTCGCTGCGCTGACGC‑CTGGCCGGCAACCGCACGCTCCACCGACCGGCCATGCTGGTAGGCGCCCCAGTAGGACGCCACCACAAGGACCAAGGCTGCGGCCCTGACCCAG             >  4:24789/1‑143                                            CCGATTACCTCGGCTAGGCGATCACCGCTGTCTCGCTGCGCTGACGC‑CTGGCCGGCAACCGCACGCTCCACCGACCGGCCATGCTGGTAGGCGCCCCAGTAGGACGCCACCACAAG                                      >  1:291336/1‑116                                            CCGATTACCTCGGCTAGGCGATCACCGCTGTCTCGCTGCGCTGACGC‑CTGGCCGGCAACCGCACGCTCCACCGACCGGCCATGCTGGTAGGCGCCCCAGTAGGACGCCACCACAAG                                      <  2:291336/116‑1                                             CGATTACCTCGGCTAGGCGATCACCGCTGTCTCGCTGCGCTGACGC‑CTGGCCGGCAACCGCACGCTCCACCGACCGGCCATGCTGGTAGGCGGCCCAGTAGGACGCCACCACAAGGACCAA                                <  3:189957/121‑1                                             CGATTACCTCGGCTAGGCGATCACCGCTGTCTCGCTGCGCTGACGC‑CTGGCCGGCAACCGCACGCTCCACCGACCGGCCATGCTGGTAGGCGGCCCAGTAGGACGCCACCACAAGGACCAA                                >  4:189957/1‑121                                               ATTACCTCGGCTAGGCGATCACCGCTGTCTCGCTGCGCTGACGCGCTGGCCGGCAACCGCACGCTCCACCGACCGGCCATGCTGGTAGGCGCCCCAGTAGGACGCCACCACAAGGACCAAGGCTGCGGCCCTGACCCAGCCATTCACGC   >  1:73483/1‑149                                               ATTACCTCGGCTAGGCGATCACCGCTGTCTCGCTGCGCTGACGC‑CTGGCCGGCAACCGCACGCTCCACCGACCGGCCATGCTGGTAGGCGCCCCAGTAGGACGCCACCACAAGGACCAAGGCTGCGGCCCTGACCCAGCCATTCACGCC  >  5:205543/1‑149                                                                                                                                                                                                      GTAATCGGCGAGCGTGGTGCCCGTCAGGAAGAACAGCGACGCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4378035‑4377989 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgaTTACCTCGGCTAGGCGATCACCGCTGTCTCGCTGCGCTGACGC‑CTGGCCGGCAACCGCACGCTCCACCGACCGGCCATGCTGGTAGGCGCCCCAGTAGGACGCCACCACAAGGACCAAGGCTGCGGCCCTGACCCAGCCATTCACGCC  >  NC_002947/4378032‑4378179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.