New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4447307 | 29 (0.550) | 3 (0.060) | 4/242 | NT | 8.4% | coding (258/1149 nt) | nicC | 6‑hydroxynicotinate 3‑monooxygenase |
? | NC_002947 | = 4447327 | 38 (0.760) | coding (238/1149 nt) | nicC | 6‑hydroxynicotinate 3‑monooxygenase |
CTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4447156‑4447307 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgac‑GGCAAT‑ACCGGTGATTACCTGTCGCGCATTCCGCTGGGCGAGTTTGCCCGCCGCGAATACGGCGCTGCCTACATCACCATCCACCGTGGCGACCTGCACGCCCTGCAGATCGAGGCCATCCAGCCGGGCACCGTGCAC < NC_002947/4447327‑4447190 CTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCG > 5:285009/1‑148 CTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCG < 6:285009/148‑1 CTTCGTAGACGATATTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCGGGATGGACTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGCATCGTCATGTAGGCAGCGCCGTATTCGCGGCGGGCAACCTCGCCCAGAGTACTGCG > 6:198664/1‑148 CGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGAC‑GGCAAT‑ACCGGTGATTACCTGTCGCG > 6:56365/1‑148 AGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGAC‑GGCAAT‑ACCGGTGATTACCTGTCGC > 1:34502/1‑109 AGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGAC‑GGCAAT‑ACCGGTGATTACCTGTCGC < 2:34502/109‑1 GAATGCGCGACAGGTAATCACCGGT‑ATTGCC‑GTCGCGCATTCCGCTGGGCGAGTTTGCCCGCCGCGAATACGGCGCTGCCTACATCACCATCCACCGTGGCGACCTGCACGCCCTGCAGATCGAGGCCATCCAGCCGGGCACCGTGCAC > 5:56365/1‑149 CTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4447156‑4447307 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgac‑GGCAAT‑ACCGGTGATTACCTGTCGCGCATTCCGCTGGGCGAGTTTGCCCGCCGCGAATACGGCGCTGCCTACATCACCATCCACCGTGGCGACCTGCACGCCCTGCAGATCGAGGCCATCCAGCCGGGCACCGTGCAC < NC_002947/4447327‑4447190 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |