New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4447307	29 (0.550)	3 (0.060)	4/242	NT	8.4%	coding (258/1149 nt)	nicC	6‑hydroxynicotinate 3‑monooxygenase
	?	NC_002947	= 4447327	38 (0.760)					coding (238/1149 nt)	nicC	6‑hydroxynicotinate 3‑monooxygenase

GAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGAATGCCTGCGCCCAGGCGGGTGAACGCCGGAGCCTGTTCGAATACCTC  >  NC_002947/4447187‑4447474                                                                                                                                              |                                                                                                                                                    gAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGc                                                                                                                                             <  8:20906/149‑1 (MQ=255)    gTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGAC‑GGCAAT‑ACCGGTGATTACCtgtcgcgcattc                                                                                                                                         >  5:56365‑M2/1‑137 (MQ=255)               ccGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTcc                                                                                                                               >  2:224428/1‑149 (MQ=255)                            cTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGCACCAGAAGTCCGGGTGCGAGCCCa                                                                                                                  >  6:235920/1‑149 (MQ=255)                            cTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCa                                                                                                                  >  8:109132/1‑149 (MQ=255)                                    gCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTc                                                                                                           >  1:217444/1‑148 (MQ=255)                                     cAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGc                                                                                                             <  4:261092/145‑1 (MQ=255)                                     cAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTc                                                                                                           <  7:109132/147‑1 (MQ=255)                                      aGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAg                                                                                                        >  2:79861/1‑149 (MQ=255)                                       gggCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGc                                                                                                       >  8:302349/1‑149 (MQ=255)                                        ggCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGc                                                                                                       <  7:302349/148‑1 (MQ=255)                                             gCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGc                                                                                                 >  7:149747/1‑149 (MQ=255)                                                     ccACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGt                                                                                                                           <  6:177680/115‑1 (MQ=255)                                                     ccACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGt                                                                                                                           >  5:177680/1‑115 (MQ=255)                                                                  tGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAg                                                                            <  1:224428/149‑1 (MQ=255)                                                                      gTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGAttt                                                                        >  1:188753/1‑149 (MQ=255)                                                                         ggCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGc                                                                                                 >  6:151408/1‑121 (MQ=255)                                                                         ggCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGc                                                                                                 <  5:151408/121‑1 (MQ=255)                                                                         ggCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTtc                                                                      <  6:110126/148‑1 (MQ=255)                                                                             gcgcCGTATTCGCTGCTGGCAAACTCGCCCAGCGGAATTATCGACAGGTAATCACCGGA‑ATTGCCGTCGAGGCTGAACCAGAAGTCCGGGTTCGAGCCGATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCAc                                                                 <  5:198664/149‑1 (MQ=255)                                                                                      tCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGAttt                                                                        >  2:249793/1‑133 (MQ=255)                                                                                      tCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGcc                                                        >  5:156198/1‑149 (MQ=255)                                                                                        gcggcgGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGa                                                      <  1:79861/149‑1 (MQ=255)                                                                                        gcggcgGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGa                                                      <  6:156198/149‑1 (MQ=255)                                                                                         cggcggGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGa                                                      >  7:29424/1‑148 (MQ=255)                                                                                          ggcggGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGata                                                    >  7:266210/1‑149 (MQ=255)                                                                                              ggCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGaa                                                <  8:266210/149‑1 (MQ=255)                                                                                                 aaaCTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGAATg                                              <  1:153581/148‑1 (MQ=255)                                                                                                 aaaCTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGAATg                                              >  2:153581/1‑148 (MQ=255)                                                                                                         ccAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGAATGCCTGCGcc                                      >  8:172082/1‑148 (MQ=255)                                                                                                                    cgcgACAGGTAATCACCGGT‑ATTGCCgtcgcgcattccgctgggcgagtttgcccgccgcgaatacggcgctgcctacatcaccatccaccgtggcgacctgcacgccctgcagatcgaggccatccagccgggcaccgtgcacttcg                           >  6:56365‑M2/1‑26 (MQ=255)                                                                                                                     gcgACAGGTAATCACCGGT‑ATTGCCgtcgcgcattccgctgggcgagtttgcccgccgcgaatacggcgctgcctacatcaccatccaccgtggcgacctgcacgccct                                                                 >  1:34502‑M2/1‑25 (MQ=255)                                                                                                                     gcgACAGGTAATCACCGGT‑ATTGCCgtcgcgcattccgctgggcgagtttgcccgccgcgaatacggcgctgcctacatcaccatccaccgtggcgacctgcacgccct                                                                 <  2:34502‑M2/109‑85 (MQ=255)                                                                                                                     gcgACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGTCGGAAGATTTTCATCACGTTAGGGCCGATATGAATGCCTGCGCCCAGGCGGGTGAAc                         >  4:117002/1‑149 (MQ=255)                                                                                                                            gTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGAATGCCTGCGCCCAGGCGGGTGAACGCCGGAg                  <  2:188753/149‑1 (MQ=255)                                                                                                                            gTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGAATGCCTGCGCCCAGGCGGGTGAACGCCGGAg                  <  7:172082/149‑1 (MQ=255)                                                                                                                             tAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGAATGCCTGCGCCCAGGCGGGTGAACGCCGGAGc                 >  7:263346/1‑149 (MQ=255)                                                                                                                             tAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGAATGCCTGCGCCCAGGCGGGTGAACGCCGGAGc                 <  2:217444/149‑1 (MQ=255)                                                                                                                                 cACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGAATGCCTgcgc                                       >  6:150532/1‑123 (MQ=255)                                                                                                                                  aCCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGAATGCCTGCGCCCAGGCGGGTGAACGCCGGAGCCTGt             <  8:149747/148‑1 (MQ=255)                                                                                                                                   ccGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGAATGCCTGCGCCCAGGCGGGTGAACGCCGGAGCCTGTTc           >  8:268179/1‑149 (MQ=255)                                                                                                                                      gT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGAATGCCTGCGCCCAGGCGGGTGAACGCCGGAGCCTGTTCGaa        >  7:296312/1‑149 (MQ=255)                                                                                                                                       t‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGTCGGAAGATTTTCATCACGTTAGGGCCGATATGAATGCCTGCGCCCAGGCGGGTGAACGCCGGAGCCTGTTCGAAt       <  3:117002/149‑1 (MQ=255)                                                                                                                                           tGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCGGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGAATGCCTGCGCCCAGGCgg                               <  3:88274/122‑1 (MQ=255)                                                                                                                                           tGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCCGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGAATGCCTGCGCCCAGGCgg                               >  4:88274/1‑122 (MQ=255)                                                                                                                                            gCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGAATGCCTGCGCCCAGGCGGGTGAACGCCGGAGCCTGTTCGAATAcc    <  8:29424/148‑1 (MQ=255)                                                                                                                                            gCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGAATGCCTGCGCCCAGGCGGGTGAACGCCGGAGCCTGTTCGAATACCt   >  1:134580/1‑149 (MQ=255)                                                                                                                                             ccGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGAATGCCTGCGCCCAGGCGGGTGAACGCCGGAGCCTGTTCGAATACCt   <  5:235920/148‑1 (MQ=255)                                                                                                                                             ccGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGAAGGCCTGCGCCCAGGCGGGTGAACGCCGGAGCCTGTTCGAATACCTc  <  7:268179/149‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                    GAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGAATGCCTGCGCCCAGGCGGGTGAACGCCGGAGCCTGTTCGAATACCTC  >  NC_002947/4447187‑4447474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.