New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4447307	29 (0.550)	3 (0.060)	4/242	NT	8.4%	coding (258/1149 nt)	nicC	6‑hydroxynicotinate 3‑monooxygenase
	?	NC_002947	= 4447327	38 (0.760)					coding (238/1149 nt)	nicC	6‑hydroxynicotinate 3‑monooxygenase

CGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGAATGCCTGCGCCCAGGCGGGTGAAC  >  NC_002947/4447186‑4447451                                                                                                                          |                                                                                                                                                  cGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACggcaataccggtgattacctgtcgcg                                                                                                                         >  6:56365‑M1/1‑122 (MQ=255)  gAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGc                                                                                                                      <  8:20906/149‑1 (MQ=255)     gTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGAC‑GGCAAT‑ACCGGTGATTACCtgtcgcgcattc                                                                                                                  >  5:56365‑M2/1‑137 (MQ=255)                ccGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTcc                                                                                                        >  2:224428/1‑149 (MQ=255)                             cTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGCACCAGAAGTCCGGGTGCGAGCCCa                                                                                           >  6:235920/1‑149 (MQ=255)                             cTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCa                                                                                           >  8:109132/1‑149 (MQ=255)                                     gCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAgg                                                                                                                                                <  1:151065/89‑1 (MQ=255)                                     gCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAgg                                                                                                                                                >  2:151065/1‑89 (MQ=255)                                     gCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTc                                                                                    >  1:217444/1‑148 (MQ=255)                                      cAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGc                                                                                      <  4:261092/145‑1 (MQ=255)                                      cAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTc                                                                                    <  7:109132/147‑1 (MQ=255)                                       aGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACggcaataccggtgattacctgtcgc                                                                                                                          >  1:34502‑M1/1‑84 (MQ=255)                                       aGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACggcaataccggtgattacctgtcgc                                                                                                                          <  2:34502‑M1/109‑26 (MQ=255)                                       aGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAg                                                                                 >  2:79861/1‑149 (MQ=255)                                        gggCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGc                                                                                >  8:302349/1‑149 (MQ=255)                                         ggCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGc                                                                                <  7:302349/148‑1 (MQ=255)                                              gCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGc                                                                          >  7:149747/1‑149 (MQ=255)                                                      ccACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGt                                                                                                    >  5:177680/1‑115 (MQ=255)                                                      ccACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGt                                                                                                    <  6:177680/115‑1 (MQ=255)                                                                   tGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAg                                                     <  1:224428/149‑1 (MQ=255)                                                                       gTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGAttt                                                 >  1:188753/1‑149 (MQ=255)                                                                          ggCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGc                                                                          <  5:151408/121‑1 (MQ=255)                                                                          ggCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGc                                                                          >  6:151408/1‑121 (MQ=255)                                                                          ggCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTtc                                               <  6:110126/148‑1 (MQ=255)                                                                              gcgcCGTATTCGCTGCTGGCAAACTCGCCCAGCGGAATTATCGACAGGTAATCACCGGA‑ATTGCCGTCGAGGCTGAACCAGAAGTCCGGGTTCGAGCCGATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCAc                                          <  5:198664/149‑1 (MQ=255)                                                                                       tCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGAttt                                                 >  2:249793/1‑133 (MQ=255)                                                                                       tCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGcc                                 >  5:156198/1‑149 (MQ=255)                                                                                         gcggcgGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGa                               <  6:156198/149‑1 (MQ=255)                                                                                         gcggcgGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGa                               <  1:79861/149‑1 (MQ=255)                                                                                          cggcggGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGa                               >  7:29424/1‑148 (MQ=255)                                                                                           ggcggGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGata                             >  7:266210/1‑149 (MQ=255)                                                                                               ggCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGaa                         <  8:266210/149‑1 (MQ=255)                                                                                                  aaaCTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGAATg                       >  2:153581/1‑148 (MQ=255)                                                                                                  aaaCTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGAATg                       <  1:153581/148‑1 (MQ=255)                                                                                                          ccAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGAATGCCTGCGcc               >  8:172082/1‑148 (MQ=255)                                                                                                                gAATGCGCGACaggtaatcaccggtattgccgtcgcgcattccgctgggcgagtttgcccgccgcgaatacggcgctgcctacatcaccatccaccgtggcgacctgcacgccctgcagatcgaggccatccagccgggcaccgtgcac         >  5:56365‑M1/1‑11 (MQ=255)                                                                                                                     cgcgACAGGTAATCACCGGT‑ATTGCCgtcgcgcattccgctgggcgagtttgcccgccgcgaatacggcgctgcctacatcaccatccaccgtggcgacctgcacgccctgcagatcgaggccatccagccgggcaccgtgcacttcg    >  6:56365‑M2/1‑26 (MQ=255)                                                                                                                      gcgACAGGTAATCACCGGT‑ATTGCCgtcgcgcattccgctgggcgagtttgcccgccgcgaatacggcgctgcctacatcaccatccaccgtggcgacctgcacgccct                                          <  2:34502‑M2/109‑85 (MQ=255)                                                                                                                      gcgACAGGTAATCACCGGT‑ATTGCCgtcgcgcattccgctgggcgagtttgcccgccgcgaatacggcgctgcctacatcaccatccaccgtggcgacctgcacgccct                                          >  1:34502‑M2/1‑25 (MQ=255)                                                                                                                      gcgACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGTCGGAAGATTTTCATCACGTTAGGGCCGATATGAATGCCTGCGCCCAGGCGGGTGAAc  >  4:117002/1‑149 (MQ=255)                                                                                                                          |                                                                                                                                                  CGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAATCACCGGT‑ATTGCCGTCGCGGCTGAACCAGAAGTCCGGGTGCGAGCCCATCAGCTCCAGCTTCTGCTCCAGCCCCATGCGGCGGAAGATTTTCATCACGTTAGGGCCGATATGAATGCCTGCGCCCAGGCGGGTGAAC  >  NC_002947/4447186‑4447451

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.