New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4518349	61 (1.150)	5 (0.100)	5/246	NT	7.9%	coding (1171/2271 nt)	clpA	ATP‑dependent serine protease
	?	NC_002947	= 4518384	57 (1.110)					coding (1136/2271 nt)	clpA	ATP‑dependent serine protease

CACATCAATGCGCTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCATTGATGTAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4518239‑4518349 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgACGAAGCCCTGCGCGCCGCTGCCGAACTGGCTTCGCGCTACATCAATGACCGACACATGCCTGACAAGGCCATCGATGTGATCGACGAGGCTGGCGCCTACCAGCGCCTGCAGCCAGAGGCCAGTCGCGTCAAGCGCATTGATGT  <  NC_002947/4518384‑4518240                                                                                                                                                                                                                                                                  CACATCAATGCGCTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCATTGATGTAGCGACGAAGCCCTGCGCGCCGCTGCCGAACTGGCTTCGCGC                                                                                                             <  3:45057/149‑1                            CTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCATTGATGTAGCGACGAAGCCCTGCGCGCCGCTGCCGAACTG                                                                                                                      <  1:48672/113‑1                            CTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCATTGATGTAGCGACGAAGCCCTGCGCGCCGCTGCCGAACTG                                                                                                                      >  2:48672/1‑113                             TCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCATTGATGTAGCGACGAAGCCCTGCGCGCCGCTGCCGAACTGGCTTCGCGCTACAT                                                                                                        >  1:40596/1‑126                             TCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCATTGATGTAGCGACGAAGCCCTGCGCGCCGCTGCCGAACTGGCTTCGCGCTACAT                                                                                                        <  2:40596/126‑1                                                                                                            AGCGACGAAGCCCTGCGCACCGCTGCCGAACTGGCTTCGCGCTACATCAATGACCGACACATGCCTGACAAGGCCATCGATGTGATCGACGAGGCTGGCGCCTACCAGCGCCTGCAGCCAGAGGCCAGTCGCGTCAAGCGCATTGATGT  <  2:129700/149‑1                                                                                                                                                                                                                                                                  CACATCAATGCGCTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCATTGATGTAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4518239‑4518349 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgACGAAGCCCTGCGCGCCGCTGCCGAACTGGCTTCGCGCTACATCAATGACCGACACATGCCTGACAAGGCCATCGATGTGATCGACGAGGCTGGCGCCTACCAGCGCCTGCAGCCAGAGGCCAGTCGCGTCAAGCGCATTGATGT  <  NC_002947/4518384‑4518240

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.