New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4518349	61 (1.150)	5 (0.100)	5/246	NT	7.9%	coding (1171/2271 nt)	clpA	ATP‑dependent serine protease
	?	NC_002947	= 4518384	57 (1.110)					coding (1136/2271 nt)	clpA	ATP‑dependent serine protease

CGACGATGTCCTCTACTTGCGGCACATCAATGCGCTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTGGAAGCGACGCGCC  >  NC_002947/4518217‑4518497                                                                                                                                      |                                                                                                                                                     cgacgaTGTCCTCTACTTGCGGCACATCAATGCGCTTGACGCGACTGTCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCa                                                                                                                                      <  5:301483/149‑1 (MQ=255) cgacgaTGTCCTCTACTTGCGGCACATCAATGCGCTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCgg                                                                                                                                        >  3:239343/1‑147 (MQ=255)  gacgaTGTCCTCTACTTGCGGCACATCAATGCGCTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAg                                                                                                                                     >  1:16860/1‑149 (MQ=255)     gaTGTCCTCTACTTGCGGCACATCAATGCGCTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAgcgg                                                                                                                                  >  3:212366/1‑149 (MQ=255)           ctctACTTGCGGCACATCAATGCGCTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGgcgcg                                                                                                                              >  6:38599/1‑147 (MQ=255)            tctACTTGCGGCACATCAATGCGCTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAg                                                                                                                           >  3:117239/1‑149 (MQ=255)                   gCGGCACATCAATGCGCTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCACCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTtc                                                                                                                     <  5:189928/148‑1 (MQ=255)                       cacaTCAATGCGCTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGacgaagccctgcgcgccgctgccgaactggcttcgcgc                                                                                                                <  3:45057‑M1/149‑39 (MQ=255)                        acaTCAATGCGCTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGTGCGCAGGGCTTCGTcgct                                                                                                               <  2:129700‑M2/149‑5 (MQ=255)                          aTCAATGCGCTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTc                                                                                                                                          <  4:326618/120‑1 (MQ=255)                          aTCAATGCGCTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTc                                                                                                                                          >  3:326618/1‑120 (MQ=255)                            cAATGCGCTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGtt                                                                                                                                           >  5:323694/1‑117 (MQ=255)                            cAATGCGCTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGtt                                                                                                                                           <  6:323694/117‑1 (MQ=255)                                 cgcTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGa                                                                                                       <  2:16860/148‑1 (MQ=255)                                  gcTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTc                                                                                                         <  4:268016/145‑1 (MQ=255)                                  gcTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGa                                                                                                       >  3:268016/1‑147 (MQ=255)                                      gACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGTGCGCAGGGCTTCGTCGCTGTACTCGAtgtt                                                                                                   <  1:129700/147‑1 (MQ=255)                                      gACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGAtgtt                                                                                                   <  4:239343/147‑1 (MQ=255)                                       aCGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCATTTTATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGAtgttg                                                                                                  <  1:100816/148‑1 (MQ=255)                                         gcgACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTTGTCGCTGTACTCGATGTTgtggt                                                                                              <  5:38599/149‑1 (MQ=255)                                                  ctctGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGacgaagccctgcgcgccgctgccgaactg                                                                                                                         <  1:48672‑M1/113‑30 (MQ=255)                                                  ctctGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGacgaagccctgcgcgccgctgccgaactg                                                                                                                         >  2:48672‑M1/1‑84 (MQ=255)                                                  ctctGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCg                                                                                      >  6:159954/1‑148 (MQ=255)                                                   tctGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGacgaagccctgcgcgccgctgccgaactggcttcgcgctacat                                                                                                           <  2:40596‑M1/126‑44 (MQ=255)                                                   tctGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGacgaagccctgcgcgccgctgccgaactggcttcgcgctacat                                                                                                           >  1:40596‑M1/1‑83 (MQ=255)                                                   tctGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGa                                                                                     >  6:339033/1‑148 (MQ=255)                                                            aGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCttt                                                                           <  4:117239/149‑1 (MQ=255)                                                              gcgcTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCa                                                                         <  4:212366/149‑1 (MQ=255)                                                                    gTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCcgc                                                                   <  5:339033/149‑1 (MQ=255)                                                                          gcCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGaa                                                             >  6:346085/1‑149 (MQ=255)                                                                          gcCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGaa                                                             >  4:244829/1‑149 (MQ=255)                                                                            cAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTtcgt                                                                                                                   >  2:185329/1‑93 (MQ=255)                                                                            cAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTtcgt                                                                                                                   <  1:185329/93‑1 (MQ=255)                                                                                 tcgtcgATCACATCGATGGCCTTGTCAGGCATGTGACGGACA‑TTGATGTAGCGCGAAGCCAGTTCCGAAGCGGCGCGCAGCGCTTCGTCGCTGTACTCGATGTTGTCGTGCCTTTCCAAACGCCCTTTCAGGCAGCGCAGAATGCCCAc                                                      >  3:145283/1‑149 (MQ=255)                                                                                        tCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCt                                               >  1:214704/1‑149 (MQ=255)                                                                                          acaTCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTc                                             >  3:112914/1‑149 (MQ=255)                                                                                            aTCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAATCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGa                                           >  8:133239/1‑149 (MQ=255)                                                                                            aTCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACg                                                     <  7:298329/139‑1 (MQ=255)                                                                                            aTCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACg                                                     >  8:298329/1‑139 (MQ=255)                                                                                             tCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGAc                                          <  2:214704/149‑1 (MQ=255)                                                                                                aTGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGaa                                                             <  1:107009/127‑1 (MQ=255)                                                                                                aTGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGaa                                                             >  2:107009/1‑127 (MQ=255)                                                                                                   tccTTGTCAGTCATGTGTCGGTCA‑TTGATGTAGCTCGAAGCCATTTCGGCAGCGGCGCTCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGTCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATgg                                    <  6:175896/148‑1 (MQ=255)                                                                                                   gCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATgg                                    >  6:204142/1‑149 (MQ=255)                                                                                                    ccTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCttt                                                                                        >  6:363351/1‑96 (MQ=255)                                                                                                    ccTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCttt                                                                                        <  5:363351/96‑1 (MQ=255)                                                                                                    ccTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTc                                             <  3:65789/139‑1 (MQ=255)                                                                                                    ccTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTc                                             >  4:65789/1‑139 (MQ=255)                                                                                                     cTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCt                                  >  8:213720/1‑149 (MQ=255)                                                                                                         tCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCt                              >  3:346448/1‑149 (MQ=255)                                                                                                             gCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGAt                                      >  4:180068/1‑137 (MQ=255)                                                                                                             gCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACa                          >  1:134516/1‑149 (MQ=255)                                                                                                             gCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACa                          >  6:169716/1‑149 (MQ=255)                                                                                                                tgtgTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATcc                       <  3:244829/149‑1 (MQ=255)                                                                                                                   gtCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCt                              <  4:51298/139‑1 (MQ=255)                                                                                                                   gtCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCt                              >  3:51298/1‑139 (MQ=255)                                                                                                                    tCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCt                   >  7:254282/1‑149 (MQ=255)                                                                                                                    tCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCt                   >  6:54384/1‑149 (MQ=255)                                                                                                                      ggTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTc                 <  4:346448/149‑1 (MQ=255)                                                                                                                          a‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCtt                                              >  2:125529/1‑116 (MQ=255)                                                                                                                          a‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCtt                                              <  1:125529/116‑1 (MQ=255)                                                                                                                          a‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTgg              >  6:19735/1‑148 (MQ=255)                                                                                                                            ttGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTGGaa            <  4:112914/149‑1 (MQ=255)                                                                                                                             tGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGAt                                      <  6:352846/122‑1 (MQ=255)                                                                                                                             tGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGAt                                      >  5:352846/1‑122 (MQ=255)                                                                                                                             tGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTGGAAg           >  5:78589/1‑149 (MQ=255)                                                                                                                               aTGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTcgctacatcaatgaccgacacatgcctgacaaggccatcgatgtgatcgacgaggctggcgcctaccagcgcctgcagccaga                                >  1:40596‑M2/1‑43 (MQ=255)                                                                                                                               aTGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTcgctacatcaatgaccgacacatgcctgacaaggccatcgatgtgatcgacgaggctggcgcctaccagcgcctgcagccaga                                <  2:40596‑M2/126‑84 (MQ=255)                                                                                                                                 gTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTCTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTGGAAGCGAc       >  1:245581/1‑149 (MQ=255)                                                                                                                                   aGCGacgaagccctgcgcaccgctgccgaactggcttcgcgctacatcaatgaccgacacatgcctgacaaggccatcgatgtgatcgacgaggctggcgcctaccagcgcctgcagccagaggccagtcgcgtcaagcgcattgatgt     <  2:129700‑M1/149‑146 (MQ=255)                                                                                                                                   aGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTGGAAGCGAcgc     >  1:310790/1‑149 (MQ=255)                                                                                                                                    gcgcGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTcgctacatcaatgaccgacacatgcctgacaaggccatcgatgtgatcgacgaggctggcgcctaccagcgcctgcagccagaggccagtcgcgtcaagcgcattgatgtg    <  3:45057‑M2/149‑112 (MQ=255)                                                                                                                                    gcgcGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTGGAAGCGAcgcg    >  8:106084/1‑149 (MQ=255)                                                                                                                                      gcgAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTGGAAGCGACGCGcc  <  2:310790/149‑1 (MQ=255)                                                                                                                                      |                                                                                                                                                     CGACGATGTCCTCTACTTGCGGCACATCAATGCGCTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTGGAAGCGACGCGCC  >  NC_002947/4518217‑4518497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.