New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4518349	61 (1.150)	5 (0.100)	5/246	NT	7.9%	coding (1171/2271 nt)	clpA	ATP‑dependent serine protease
	?	NC_002947	= 4518384	57 (1.110)					coding (1136/2271 nt)	clpA	ATP‑dependent serine protease

ACATCAATGCGCTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTGGAAGCGACGCGCCAGGGCACGATCCTTCTCGAAGATGCCGCGAAA  >  NC_002947/4518240‑4518529                                                                                                                                                  |                                                                                                                                                  acaTCAATGCGCTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGTGCGCAGGGCTTCGTcgct                                                                                                                                               <  2:129700‑M2/149‑5 (MQ=255)          cgcTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGa                                                                                                                                       <  2:16860/148‑1 (MQ=255)           gcTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTc                                                                                                                                         <  4:268016/145‑1 (MQ=255)           gcTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGa                                                                                                                                       >  3:268016/1‑147 (MQ=255)               gACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGTGCGCAGGGCTTCGTCGCTGTACTCGAtgtt                                                                                                                                   <  1:129700/147‑1 (MQ=255)               gACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGAtgtt                                                                                                                                   <  4:239343/147‑1 (MQ=255)                aCGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCATTTTATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGAtgttg                                                                                                                                  <  1:100816/148‑1 (MQ=255)                  gcgACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTTGTCGCTGTACTCGATGTTgtggt                                                                                                                              <  5:38599/149‑1 (MQ=255)                           ctctGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCg                                                                                                                      >  6:159954/1‑148 (MQ=255)                            tctGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGa                                                                                                                     >  6:339033/1‑148 (MQ=255)                                     aGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCttt                                                                                                           <  4:117239/149‑1 (MQ=255)                                       gcgcTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCa                                                                                                         <  4:212366/149‑1 (MQ=255)                                             gTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCcgc                                                                                                   <  5:339033/149‑1 (MQ=255)                                                   gcCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGaa                                                                                             >  6:346085/1‑149 (MQ=255)                                                   gcCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGaa                                                                                             >  4:244829/1‑149 (MQ=255)                                                     cAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTtcgt                                                                                                                                                   <  1:185329/93‑1 (MQ=255)                                                     cAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTtcgt                                                                                                                                                   >  2:185329/1‑93 (MQ=255)                                                          tcgtcgATCACATCGATGGCCTTGTCAGGCATGTGACGGACA‑TTGATGTAGCGCGAAGCCAGTTCCGAAGCGGCGCGCAGCGCTTCGTCGCTGTACTCGATGTTGTCGTGCCTTTCCAAACGCCCTTTCAGGCAGCGCAGAATGCCCAc                                                                                      >  3:145283/1‑149 (MQ=255)                                                                 tCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCt                                                                               >  1:214704/1‑149 (MQ=255)                                                                   acaTCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTc                                                                             >  3:112914/1‑149 (MQ=255)                                                                     aTCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAATCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGa                                                                           >  8:133239/1‑149 (MQ=255)                                                                     aTCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACg                                                                                     <  7:298329/139‑1 (MQ=255)                                                                     aTCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACg                                                                                     >  8:298329/1‑139 (MQ=255)                                                                      tCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGAc                                                                          <  2:214704/149‑1 (MQ=255)                                                                         aTGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGaa                                                                                             <  1:107009/127‑1 (MQ=255)                                                                         aTGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGaa                                                                                             >  2:107009/1‑127 (MQ=255)                                                                            tccTTGTCAGTCATGTGTCGGTCA‑TTGATGTAGCTCGAAGCCATTTCGGCAGCGGCGCTCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGTCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATgg                                                                    <  6:175896/148‑1 (MQ=255)                                                                            gCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATgg                                                                    >  6:204142/1‑149 (MQ=255)                                                                             ccTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCttt                                                                                                                        <  5:363351/96‑1 (MQ=255)                                                                             ccTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCttt                                                                                                                        >  6:363351/1‑96 (MQ=255)                                                                             ccTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTc                                                                             >  4:65789/1‑139 (MQ=255)                                                                             ccTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTc                                                                             <  3:65789/139‑1 (MQ=255)                                                                              cTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCt                                                                  >  8:213720/1‑149 (MQ=255)                                                                                  tCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCt                                                              >  3:346448/1‑149 (MQ=255)                                                                                      gCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGAt                                                                      >  4:180068/1‑137 (MQ=255)                                                                                      gCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACa                                                          >  1:134516/1‑149 (MQ=255)                                                                                      gCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACa                                                          >  6:169716/1‑149 (MQ=255)                                                                                         tgtgTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATcc                                                       <  3:244829/149‑1 (MQ=255)                                                                                            gtCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCt                                                              >  3:51298/1‑139 (MQ=255)                                                                                            gtCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCt                                                              <  4:51298/139‑1 (MQ=255)                                                                                             tCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCt                                                   >  7:254282/1‑149 (MQ=255)                                                                                             tCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCt                                                   >  6:54384/1‑149 (MQ=255)                                                                                               ggTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTc                                                 <  4:346448/149‑1 (MQ=255)                                                                                                   a‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCtt                                                                              <  1:125529/116‑1 (MQ=255)                                                                                                   a‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCtt                                                                              >  2:125529/1‑116 (MQ=255)                                                                                                   a‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTgg                                              >  6:19735/1‑148 (MQ=255)                                                                                                     ttGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTGGaa                                            <  4:112914/149‑1 (MQ=255)                                                                                                      tGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGAt                                                                      >  5:352846/1‑122 (MQ=255)                                                                                                      tGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGAt                                                                      <  6:352846/122‑1 (MQ=255)                                                                                                      tGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTGGAAg                                           >  5:78589/1‑149 (MQ=255)                                                                                                        aTGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTcgctacatcaatgaccgacacatgcctgacaaggccatcgatgtgatcgacgaggctggcgcctaccagcgcctgcagccaga                                                                >  1:40596‑M2/1‑43 (MQ=255)                                                                                                        aTGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTcgctacatcaatgaccgacacatgcctgacaaggccatcgatgtgatcgacgaggctggcgcctaccagcgcctgcagccaga                                                                <  2:40596‑M2/126‑84 (MQ=255)                                                                                                          gTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTCTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTGGAAGCGAc                                       >  1:245581/1‑149 (MQ=255)                                                                                                            aGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTGGAAGCGAcgc                                     >  1:310790/1‑149 (MQ=255)                                                                                                             gcgcGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTcgctacatcaatgaccgacacatgcctgacaaggccatcgatgtgatcgacgaggctggcgcctaccagcgcctgcagccagaggccagtcgcgtcaagcgcattgatgtg                                    <  3:45057‑M2/149‑112 (MQ=255)                                                                                                             gcgcGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTGGAAGCGAcgcg                                    >  8:106084/1‑149 (MQ=255)                                                                                                               gcgAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTGGAAGCGACGCGcc                                  <  2:310790/149‑1 (MQ=255)                                                                                                                    gCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTGGAAGCGACGCGCCAGGGc                             <  5:346085/149‑1 (MQ=255)                                                                                                                      cAGTTCGGCAGCGGCGCGCAGGGCTTCGTcgctacatcaatgaccgacacatgcctgacaaggccatcgatgtgatcgacgaggctggcgcctaccagcgcctgcagccagag                                                               <  1:48672‑M2/113‑85 (MQ=255)                                                                                                                      cAGTTCGGCAGCGGCGCGCAGGGCTTCGTcgctacatcaatgaccgacacatgcctgacaaggccatcgatgtgatcgacgaggctggcgcctaccagcgcctgcagccagag                                                               >  2:48672‑M2/1‑29 (MQ=255)                                                                                                                      cAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTGGAAGCGACGCGCCAGGGCAc                           >  3:173597/1‑149 (MQ=255)                                                                                                                        gTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTGGAAGCGACGCGCCAGGGCACGa                         <  7:213720/149‑1 (MQ=255)                                                                                                                           cGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTGGAAGCGACGCGCCAGGGCACGATc                       <  5:159954/148‑1 (MQ=255)                                                                                                                               aGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTGGAAGCGACGCGCCAGGGCACGATCCTtct                  <  5:169716/149‑1 (MQ=255)                                                                                                                                         aGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCTCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTGGAAGCGACGCGCCAGGGCACGATCCTTCTCGAAGATGcc        <  8:254282/149‑1 (MQ=255)                                                                                                                                              ttCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTGGAAGCGACGCGCCAGGGCACGATCCTTCTCGAAGATGCCGCGa    >  7:155791/1‑148 (MQ=255)                                                                                                                                                cgtcgCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCTCGGTGTCTTCGACCGATGGCTGGGTGACATCCACCTTGTGGAAGCGACGCGCCAGGGCACGATCCTTCTCGATGATGCCGCGaaa  <  4:145283/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                  ACATCAATGCGCTTGACGCGACTGGCCTCTGGCTGCAGGCGCTGGTAGGCGCCAGCCTCGTCGATCACATCGATGGCCTTGTCAGGCATGTGTCGGTCA‑TTGATGTAGCGCGAAGCCAGTTCGGCAGCGGCGCGCAGGGCTTCGTCGCTGTACTCGATGTTGTGGTGGCTTTCGAAACGCCCTTTCAGGCCGCGCAGAATGCCCACGGTGTCTTCGACCGATGGCTCGCTGACATCCACCTTCTGGAAGCGACGCGCCAGGGCACGATCCTTCTCGAAGATGCCGCGAAA  >  NC_002947/4518240‑4518529

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.