New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4583512	24 (0.450)	7 (0.140)	7/242	NT	23.0%	intergenic (‑85/+86)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
	?	NC_002947	= 4583542	24 (0.480)					intergenic (‑115/+56)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase

GTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4583359‑4583512 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaccgGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAGCTCGGATGTCTGTGCATGCAATTGAAAGGAGTCGCACATGGCCAAGCGTTCCCGCCCGGCAGCCTTCA  <  NC_002947/4583542‑4583397                                                                                                                                                                                                                                                                                                              GTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCTGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGA                                                                                                                                                         <  2:206539/149‑1                      CCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGA                                                                                                                                                         <  3:252247/128‑1                      CCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGA                                                                                                                                                         >  4:252247/1‑128                                           GGCTGCCGGGCGGGAACGCTTGGCCATGTGCGAGTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGCTCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGT                                                                                                                >  8:181574/1‑148                                               cgctctCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCCCAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTCCCCGCGAAGATGACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATC                                                                                                            <  7:97389/142‑1                                                CCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCT                                                                                                           <  7:181574/148‑1                                                     CGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGAGTTTATCCGCGA‑‑‑‑‑ACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAA                                                                                                <  6:314013/149‑1                                                      GGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATC                                                                                                            >  8:97389/1‑141                                                                         CGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTATCCGCGA‑‑‑‑‑ACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGC                                                                                           >  7:36339/1‑134                                                                         CGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTATCCGCGA‑‑‑‑‑ACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGC                                                                                           <  8:36339/134‑1                                                                                                                                                gcATGGCACCGGCTTCGCCGGTGTCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAGCTCGGATGTCTGTGCATGCAATTGAAAGGAGTCGCACATGGCCAAGCGTTCCCGCCCGG           >  3:29720/3‑148                                                                                                                                                  ATGGCACCGGCTTCGCCGGTGTCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAGCTCGGATGTCTGTGCATGCAATTGAAAGGAGTCGCACATGGCCAAGCGTTCCCGCCCGGCAG        >  8:45154/1‑149                                                                                                                                                       ACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAGCTCGGATGTCTGTGCATGCAATTGAAA                                           >  8:204474/1‑109                                                                                                                                                        CCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAGCTCGGATGTCTGTGCATGCAATTGAAAGGAGTCGCACATGGCCAAGCGTTCCCGCCCGGCAGCCTTCA  <  5:80704/149‑1                                                                                                                                                                                                                                                                                                              GTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4583359‑4583512 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaccgGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAGCTCGGATGTCTGTGCATGCAATTGAAAGGAGTCGCACATGGCCAAGCGTTCCCGCCCGGCAGCCTTCA  <  NC_002947/4583542‑4583397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.