New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4583512	24 (0.450)	7 (0.140)	7/242	NT	23.0%	intergenic (‑85/+86)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
	?	NC_002947	= 4583542	24 (0.480)					intergenic (‑115/+56)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase

TGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCG  >  NC_002947/4583397‑4583673                                                                                                                                                  |                                                                                                                                    tGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCcgg                                                                                                                                  <  5:80704‑M2/149‑4 (MQ=255)  gAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGACACCGGCGAAGCCGgt                                                                                                                                 >  4:29720/1‑149 (MQ=255)       cTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGACACCGGCGAAGCcggtgccat                                                                                                                            >  8:45154‑M2/1‑140 (MQ=255)          ccGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTcgcg                                                                                                                          <  5:80864/148‑1 (MQ=255)          ccGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGACACCGGCGAAGCcggtgccatgc                                                                                                                          >  3:29720‑M2/1‑137 (MQ=255)                  gAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGAttgtttg                                                                                                                 >  5:124685/1‑143 (MQ=255)                       cTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTcc                                                                                                            <  5:89606/149‑1 (MQ=255)                            ccATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGCTCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGACGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACgg                                                                                                       >  1:257808/1‑149 (MQ=255)                            ccATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACgg                                                                                                       >  1:262170/1‑149 (MQ=255)                              aTGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGATGTTCGCGGATAAACCCGCTCCTACgggg                                                                                                     <  5:130078/149‑1 (MQ=255)                              aTGTGCGACTCCTCTCAATTGCATGCACAGACATCCGAGCTTGCTCTATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGGGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACgggg                                                                                                     <  7:131087/149‑1 (MQ=255)                                          tttCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCcggt                                                                                                                                 >  8:204474‑M2/1‑105 (MQ=255)                                          tttCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAAcc                                                                                                                  >  6:287294/1‑124 (MQ=255)                                          tttCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAAcc                                                                                                                  <  5:287294/124‑1 (MQ=255)                                          tttCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACgg                                                                                                       <  1:240955/135‑1 (MQ=255)                                          tttCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACgg                                                                                                       >  2:240955/1‑135 (MQ=255)                                          tttCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCCCAg                                                                                         >  5:54093/1‑149 (MQ=255)                                                        acaGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACggg                                                                                                      >  8:265025/1‑122 (MQ=255)                                                        acaGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACggg                                                                                                      <  7:265025/122‑1 (MQ=255)                                                            aCATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCt                                                                                                              >  2:36645/1‑110 (MQ=255)                                                                                          gCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCcggtgttcgcggataaacccgctcctacgggggatcgagcaagctcggatgtctgtgcatgcaattgaaaggagtcg                                                        >  7:36339‑M2/1‑57 (MQ=255)                                                                                          gCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCcggtgttcgcggataaacccgctcctacgggggatcgagcaagctcggatgtctgtgcatgcaattgaaaggagtcg                                                        <  8:36339‑M2/134‑78 (MQ=255)                                                                                              gTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGt                                     >  6:219041/1‑149 (MQ=255)                                                                                               tttACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCcggtgttcgcggataaactcgctcctacgggggatcgagcaagctcggatgtctgtgcatgcaattgaaaggagtcgcacatggccaagcgttcccg                                    <  6:314013‑M2/149‑98 (MQ=255)                                                                                               cgctctcgcgAAGATGCCACCGCGGTGCCGAGGTGCATGGCACCGGCGTGGCCGTTGTTCGCGTATAAACCCGGTCGGTC‑GGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGc                                   <  8:123946/143‑1 (MQ=255)                                                                                                      gcgAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCAAC‑GGGGGGGGGGCCCAGTCTCAACCTTGTTAACGGGCGTATTAGATGCGGCAGATGCCGAACGGCCGGTGCCatatag                            >  7:123946/1‑144 (MQ=37)                                                                                                          aGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCcggtgtcatcttcgcgggtaaacccgctcctacgggggatcgagcaagctcggatgtctgtgcatgcaattgaaaggagtcgcacatggccaagcgttcccgcccgg                          <  7:181574‑M2/148‑108 (MQ=255)                                                                                                           gATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCcggtgtcatcttcgcgggtaaacccgctcctacgggggatcgagcaagctcggatgtctgtgcatgcaattgaaaggagtcgcacatggccaagcgttccc                                >  8:97389‑M2/1‑40 (MQ=255)                                                                                                           gATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCcggtgtcatcttcgcggggaaacccgctcctacgggggatcgagcaagctcggatgtctgggcatgcaattgaaaggagtcgcacatggccaagcgttcccgagagcg                         <  7:97389‑M2/148‑109 (MQ=255)                                                                                                             tGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGGGCCAGATGCCGAACGGCAGGTGCCAGGGCTATATgc                      >  3:80705/1‑149 (MQ=255)                                                                                                             tGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATgc                      <  5:219041/149‑1 (MQ=255)                                                                                                              gACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCCAAGTCTGAACATTGTTAAAGGTGTTTTTCGATGCGCCACATGACAAACGGCAGTTCCCAGGGCTCAATgc                      >  2:301209/1‑148 (MQ=25)                                                                                                               acacCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCcggtgtcatcttcgcgggtaaacccgctcctacgggggagcgagcaagctcggatgtctgtgcatgcaattgaaaggactcgcacatggccaagcgttcccgcccggcagcc                     >  8:181574‑M2/1‑36 (MQ=255)                                                                                                                        tGCCGTGGTGGCTGGCAACGGGGTCGGCGGGGTTCGCCGATTAACCCGCTTCTACGGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTgg           <  1:301209/149‑1 (MQ=255)                                                                                                                                  cATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCACAGAATGAACCTTGTAAACGGGCTTTTACGATGCCCCAGATGCCGAACGGCAGGGGCCCGGGCACTATGCGCTACCATTGGGGCTTGCCg  >  2:86483/1‑148 (MQ=37)                                                                                                                                   aTGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCCCAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCAAggg                              >  5:129761/1‑119 (MQ=255)                                                                                                                                       cACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAggg                              >  3:159176/1‑115 (MQ=255)                                                                                                                                                  |                                                                                                                                    TGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCG  >  NC_002947/4583397‑4583673

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.