New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4614448 =	55 (1.040)	4 (0.080)	4/244	NT	7.6%	coding (819/4593 nt)	PP_4085	rhs family protein
	?	NC_002947	4614479 =	45 (0.890)					coding (850/4593 nt)	PP_4085	rhs family protein

TAGCGCCGTGCCCATTGGATGGCCAGCAAGCCTGGGAGATTGAAGTCGATGTCCTCCGGACCCTCCTGCAGCTTGCTCCCGGTGGCAACAGCAACCGGGTTGCCTAATGTGCACCCTTTGATGCGGCCAAACCTTCGGGAGATAAGCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4614597‑4614448 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatcAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATGGGCACGGCGCTACGACAGCAGGGACATGCGCAGCGACG  >  NC_002947/4614479‑4614623                                                                                                                                                                                                                                                                                                         TAGCGCCGTGCCCATTGGATGGCCAGCAAGCCTGGGAGATTGAAGTCGATGTCCTCCGGACCCTCCTGCAGCTTGCTCCCGGTGGCAACAGCAACCGGGTTGCCTAATGTGCACCCTTTGATGCGGCCAAACCTTCGGGAGATAAGCAT                                                                                                                                                    <  5:349787/149‑1                                                                                                                   CCTTTGATGCGGCCAAACCTTCGGGAGATAAGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTC                                                                     <  5:202180/114‑1                                                                                                                   CCTTTGATGCGGCCAAACCTTCGGGAGATAAGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTC                                                                     >  6:202180/1‑114                                                                                                                     TTTGATGCGGCCAAACCTTCGGGAGATAAGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCA                                           >  5:143287/1‑138                                                                                                                     TTTGATGCGGCCAAACCTTCGGGAGATAAGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCA                                           <  6:143287/138‑1                                                                                                                                                   CATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATGGGCACGGCGCTACGACAGCAGGGACATGCGCAGCGACG  <  3:164367/149‑1                                                                                                                                                                                                                                                                                                         TAGCGCCGTGCCCATTGGATGGCCAGCAAGCCTGGGAGATTGAAGTCGATGTCCTCCGGACCCTCCTGCAGCTTGCTCCCGGTGGCAACAGCAACCGGGTTGCCTAATGTGCACCCTTTGATGCGGCCAAACCTTCGGGAGATAAGCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4614597‑4614448 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatcAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATGGGCACGGCGCTACGACAGCAGGGACATGCGCAGCGACG  >  NC_002947/4614479‑4614623

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.