| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4614448 = | 55 (1.040) | 4 (0.080) | 4/244 | NT | 7.6% | coding (819/4593 nt) | PP_4085 | rhs family protein |
| ? | NC_002947 | 4614479 = | 45 (0.890) | coding (850/4593 nt) | PP_4085 | rhs family protein | |||||
TTGATGTGAATGAAAACGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATGGGCACGGCGCTACGACAGCAGGGACATGCGCAGCGACGGTC > NC_002947/4614333‑4614626 | ttGATGTGAATGAAAACGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCa > 1:19356/1‑147 (MQ=255) aTGTGAATGAAAACGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAgg < 6:235638/148‑1 (MQ=255) aatgaaAACGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGca > 4:322984/1‑148 (MQ=255) tggatggccagcaagcctgggagattgaagtcgatgtcctccggaccctcctgcagcttgctcccggtggcaacagcaaccgggttgcctaatgtgcaccctttGATGCTTATCTCCCGAAGGTTTGGCCGCATCaaa < 6:143287‑M1/34‑1 (MQ=255) tggatggccagcaagcctgggagattgaagtcgatgtcctccggaccctcctgcagcttgctcccggtggcaacagcaaccgggttgcctaatgtgcaccctttGATGCTTATCTCCCGAAGGTTTGGCCGCATCaaa > 5:143287‑M1/105‑138 (MQ=255) aaaCGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAg < 2:19356/149‑1 (MQ=255) gCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCgg > 5:324461/1‑149 (MQ=255) gCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCgg < 3:341967/149‑1 (MQ=255) ccAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGtt < 8:202459/149‑1 (MQ=255) gtgCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGt > 8:66705/1‑149 (MQ=255) tgCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGtt < 4:323645/149‑1 (MQ=255) tgCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGtt < 7:66705/149‑1 (MQ=255) gcgcATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTg > 7:163160/1‑149 (MQ=255) gaagtcgatgtcctccggaccctcctgcagcttgctcccggtggcaacagcaaccgggttgcctaatgtgcaccctttGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAgg > 6:202180‑M1/79‑114 (MQ=255) gaagtcgatgtcctccggaccctcctgcagcttgctcccggtggcaacagcaaccgggttgcctaatgtgcaccctttGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAgg < 5:202180‑M1/36‑1 (MQ=255) tggCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGa < 2:223489/149‑1 (MQ=255) cGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTg > 6:214497/1‑149 (MQ=255) gCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTg > 6:105923/1‑147 (MQ=255) aCGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCagga < 8:163160/149‑1 (MQ=255) ggACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCg > 5:327941/1‑148 (MQ=255) aCATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCggag < 3:322984/149‑1 (MQ=255) aTTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGa > 4:330355/1‑124 (MQ=255) aTTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGa > 8:113837/1‑124 (MQ=255) aTTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGa < 3:330355/124‑1 (MQ=255) aTTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGa < 7:113837/124‑1 (MQ=255) ttCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGAc < 4:220575/149‑1 (MQ=255) gCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCagga > 3:228887/1‑133 (MQ=255) gCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCagga < 4:228887/133‑1 (MQ=255) aCGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGAc < 5:214497/149‑1 (MQ=255) aagagcaagaTTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCaa > 2:68204/1‑149 (MQ=255) agcaagaTTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAAtct < 5:105923/149‑1 (MQ=255) aagaTTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTcc > 6:268395/1‑148 (MQ=255) gATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCAc < 6:38496/93‑1 (MQ=255) gATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCAc > 5:38496/1‑93 (MQ=255) gTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTgg > 4:164367/1‑149 (MQ=255) ccGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATc < 8:199504/119‑1 (MQ=255) ccGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATc > 7:199504/1‑119 (MQ=255) gggATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATcc > 8:273924/1‑148 (MQ=255) ggATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGc > 1:157273/1‑138 (MQ=255) ggATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGc < 2:157273/138‑1 (MQ=255) ttattGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATgg < 1:68204/149‑1 (MQ=255) ttGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATGGGCa > 7:11747/1‑149 (MQ=255) cctttgatgcggccaaaccttcgggagataagcatcAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTc < 5:202180‑M2/78‑1 (MQ=255) cctttgatgcggccaaaccttcgggagataagcatcAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTc > 6:202180‑M2/37‑114 (MQ=255) cGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATGGGCACgg < 6:324461/149‑1 (MQ=255) tttgatgcggccaaaccttcgggagataagcatcAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCa < 6:143287‑M2/104‑1 (MQ=255) tttgatgcggccaaaccttcgggagataagcatcAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCa > 5:143287‑M2/35‑138 (MQ=255) ATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATGGGCACGGCGCTa < 5:349787‑M1/149‑1 (MQ=255) ttATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATGGGCACGGCGCTACGa > 3:232433/1‑148 (MQ=255) ttATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATGGGCACGGCGCTACGa > 7:273280/1‑148 (MQ=255) aTCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATGGGCACGGCGCTACGa < 4:232433/146‑1 (MQ=255) aTCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATGGGCACGGCGCTACGAcag > 2:152434/1‑149 (MQ=255) aTCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATGGGCACGGCGCTACGAcag > 1:238208/1‑149 (MQ=255) tctcCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATGGGCACGGCGCTACGAcag < 7:273924/148‑1 (MQ=255) tcCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATGGGCACGGCGCTACGAcagcag > 4:245769/1‑149 (MQ=255) ccGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATGGGCACGGCGCTACGACAGCAgg < 1:22921/148‑1 (MQ=255) ggCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATGGGCACGGCGCTACGACAGCAGGGACATGCGCa < 1:152434/148‑1 (MQ=255) catcAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATGGGCACGGCGCTACGACAGCAGGGACATGCGCAGCGACg < 3:164367‑M2/145‑1 (MQ=255) aaaGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATGGGCACGGCGCTACGACAGCAGGGACATGCGCAGCGACGGTc < 6:327941/148‑1 (MQ=255) | TTGATGTGAATGAAAACGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATGGGCACGGCGCTACGACAGCAGGGACATGCGCAGCGACGGTC > NC_002947/4614333‑4614626 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |