| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4614448 = | 55 (1.040) | 4 (0.080) | 4/244 | NT | 7.6% | coding (819/4593 nt) | PP_4085 | rhs family protein |
| ? | NC_002947 | 4614479 = | 45 (0.890) | coding (850/4593 nt) | PP_4085 | rhs family protein | |||||
TTCAGGTGACAAGACCACCTGCGATGCCACGATTGATGTGAATGA‑AAACGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATGGGCACGG > NC_002947/4614301‑4614592 | ttCAGGTGACAAGACCACCTGCGATGCCACGATTGATGTGAATGA‑AAACGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGa > 3:260275/1‑149 (MQ=255) cgtcgctgcgcatgtccctgctgtcgtagcgccgtgcccattggatggccagcaagcctgggagattgaagtcgatgtcctccggaccctcctgcagcttgctcccggtggcaacagcaaccgggttgcctaatgtgcaccctttGATg < 3:164367‑M1/4‑1 (MQ=255) gTGACAAGACCACCTGCGATGCCACGATTGATGTGAATGA‑AAACGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCt > 4:341967/1‑148 (MQ=255) aCAAGACCACCTGCGATGCCACGATTGATGTGAATGA‑AAACGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTAtc < 8:46195/149‑1 (MQ=255) gACCACCTGCGATGCCACGATTGATGTGAATGAGAAACGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTcc > 1:223489/1‑149 (MQ=255) caccTGCGATGCCACGATTGATGTGAATGA‑AAACGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCg > 1:25033/1‑147 (MQ=255) caccTGCGATGCCACGATTGATGTGAATGA‑AAACGTATCGCCCAATGTGCGCAATGGTGGCGGTACGGCGACGGTCCGCGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGaa > 2:22921/1‑149 (MQ=255) accTGCGATGCCACGATTGATGTGAATGA‑AAACGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTcc < 8:235553/144‑1 (MQ=255) accTGCGATGCCACGATTGATGTGAATGA‑AAACGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTcc > 7:235553/1‑144 (MQ=255) accTGCGATGCCACGATTGATGTGAATGA‑AAACGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAg > 7:202459/1‑149 (MQ=255) aTGCCACGATTGATGTGAATGA‑AAACGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACTGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGc < 3:283823/149‑1 (MQ=255) ccACGATTGATGTGAATGA‑AAACGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGc < 5:350017/149‑1 (MQ=255) cACGATTGATGTGAATGA‑AAACGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCa > 3:220575/1‑149 (MQ=255) aCGATTGATGTGAATGA‑AAACGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTAGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGAAGCTTATCTCCCGAAGGTTTGGCCGCAt < 4:271215/149‑1 (MQ=255) ttGATGTGAATGA‑AAACGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCa > 1:19356/1‑147 (MQ=255) aTGTGAATGA‑AAACGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAgg < 6:235638/148‑1 (MQ=255) gtgAATGA‑AAACGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCtt > 3:99147/1‑117 (MQ=255) gtgAATGA‑AAACGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCtt < 4:99147/117‑1 (MQ=255) aatga‑aAACGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGca > 4:322984/1‑148 (MQ=255) tggatggccagcaagcctgggagattgaagtcgatgtcctccggaccctcctgcagcttgctcccggtggcaacagcaaccgggttgcctaatgtgcaccctttGATGCTTATCTCCCGAAGGTTTGGCCGCATCaaa < 6:143287‑M1/34‑1 (MQ=255) tggatggccagcaagcctgggagattgaagtcgatgtcctccggaccctcctgcagcttgctcccggtggcaacagcaaccgggttgcctaatgtgcaccctttGATGCTTATCTCCCGAAGGTTTGGCCGCATCaaa > 5:143287‑M1/105‑138 (MQ=255) aaaCGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAg < 2:19356/149‑1 (MQ=255) gCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTAtctc < 7:290011/105‑1 (MQ=255) gCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTAtctc > 8:290011/1‑105 (MQ=255) gCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCgg < 3:341967/149‑1 (MQ=255) gCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCgg > 5:324461/1‑149 (MQ=255) ccAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGtt < 8:202459/149‑1 (MQ=255) gtgCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGt > 8:66705/1‑149 (MQ=255) tgCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGtt < 4:323645/149‑1 (MQ=255) tgCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGtt < 7:66705/149‑1 (MQ=255) gcgcATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTg > 7:163160/1‑149 (MQ=255) gaagtcgatgtcctccggaccctcctgcagcttgctcccggtggcaacagcaaccgggttgcctaatgtgcaccctttGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAgg < 5:202180‑M1/36‑1 (MQ=255) gaagtcgatgtcctccggaccctcctgcagcttgctcccggtggcaacagcaaccgggttgcctaatgtgcaccctttGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAgg > 6:202180‑M1/79‑114 (MQ=255) tggCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGa < 2:223489/149‑1 (MQ=255) cGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTg > 6:214497/1‑149 (MQ=255) gCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTg > 6:105923/1‑147 (MQ=255) aCGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCagga < 8:163160/149‑1 (MQ=255) ggACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCg > 5:327941/1‑148 (MQ=255) aCATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCggag < 3:322984/149‑1 (MQ=255) aTTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGa > 4:330355/1‑124 (MQ=255) aTTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGa > 8:113837/1‑124 (MQ=255) aTTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGa < 3:330355/124‑1 (MQ=255) aTTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGa < 7:113837/124‑1 (MQ=255) ttCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGAc < 4:220575/149‑1 (MQ=255) gCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTgg < 6:104035/70‑1 (MQ=255) gCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCagga < 4:228887/133‑1 (MQ=255) gCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCagga > 3:228887/1‑133 (MQ=255) aCGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGAc < 5:214497/149‑1 (MQ=255) aagagcaagaTTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCaa > 2:68204/1‑149 (MQ=255) agcaagaTTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAAtct < 5:105923/149‑1 (MQ=255) aagaTTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTcc > 6:268395/1‑148 (MQ=255) gATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCAc < 6:38496/93‑1 (MQ=255) gATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCAc > 5:38496/1‑93 (MQ=255) gTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTgg > 4:164367/1‑149 (MQ=255) ccGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATc > 7:199504/1‑119 (MQ=255) ccGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATc < 8:199504/119‑1 (MQ=255) gggATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATcc > 8:273924/1‑148 (MQ=255) ggATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGc < 2:157273/138‑1 (MQ=255) ggATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGc > 1:157273/1‑138 (MQ=255) ttattGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATgg < 1:68204/149‑1 (MQ=255) ttGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATGGGCa > 7:11747/1‑149 (MQ=255) cGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATGGGCACgg < 6:324461/149‑1 (MQ=255) | TTCAGGTGACAAGACCACCTGCGATGCCACGATTGATGTGAATGA‑AAACGTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTTTACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTGTTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATGGGCACGG > NC_002947/4614301‑4614592 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |