New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 476612444 (0.830)4 (0.080) 4/246 NT 8.1% coding (777/2439 nt) fpvA TonB‑dependent outer membrane ferripyoverdine receptor FpvA
?NC_002947 = 4766159 48 (0.940)coding (812/2439 nt) fpvA TonB‑dependent outer membrane ferripyoverdine receptor FpvA

ACAACCTGATGTTCGATGGCCTGCCCACCACCTACAACGCCGACTGGGTCGCCGCGGCCGACATGGCGCCCTACGACCGCGTCGAGATCGTGCGGGGCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4765973‑4766124
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgACGCTGCCCTGGAAATCCTTGGTAGGGCGTTTGCGCACCATGTTGA  <  NC_002947/4766159‑4766114
                                                                                                                                                                                                      
ACAACCTGATGTTCGATGGCCTGCCCACCACCTACAACGCCGACTGGGTCGCCGCGGCCGACATGGCGCCCTACGACCGCGTCGAGATCGTGCGGGGCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATG                                                   >  3:200435/1‑149
              GATGGCCTGCCCACCACCTACAACGCCGACTGGGTCGCCGCGGCCGACATGGCGCCCTACGACCGCGTCGAGATCGTGCGGGGCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTG                                                >  1:105954/1‑138
              GATGGCCTGCCCACCACCTACAACGCCGACTGGGTCGCCGCGGCCGACATGGCGCCCTACGACCGCGTCGAGATCGTGCGGGGCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTG                                                <  2:105954/138‑1
                                                   CCGCGGCCGACATGGCGCCCTACGACCGCGTCGAGATCGTGCGGGGCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGACGCTGCCCTGGAAATCCTTGGTAGGGCGTTTGCGCACCATGTTGA  <  3:287273/147‑1
                                                   CCGCGGCCGACATGGCGCCCTACGACCGCGTCGAGATCGTGCGGGGCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGACGCTGCCCTGGAAATCCTTGGTAGGGCGTTTGCGCACCATGTTGA  >  4:287273/1‑147
                                                                                   GAGATCGTGCGGGGCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGACGCTGCCCTGGAAATCCTTGGTAGGGCGTTTGCGCACCATGT     >  1:330835/1‑112
                                                                                   GAGATCGTGCGGGGCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGACGCTGCCCTGGAAATCCTTGGTAGGGCGTTTGCGCACCATGT     <  2:330835/112‑1
                                                                                                                                                                                                      
ACAACCTGATGTTCGATGGCCTGCCCACCACCTACAACGCCGACTGGGTCGCCGCGGCCGACATGGCGCCCTACGACCGCGTCGAGATCGTGCGGGGCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4765973‑4766124
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgACGCTGCCCTGGAAATCCTTGGTAGGGCGTTTGCGCACCATGTTGA  <  NC_002947/4766159‑4766114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.