New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4766124	44 (0.830)	4 (0.080)	4/246	NT	8.1%	coding (777/2439 nt)	fpvA	TonB‑dependent outer membrane ferripyoverdine receptor FpvA
	?	NC_002947	= 4766159	48 (0.940)					coding (812/2439 nt)	fpvA	TonB‑dependent outer membrane ferripyoverdine receptor FpvA

GGTCGCCGCGGCCGACATGGCGCCCTACGACCGCGTCGAGATCGTGCGGGGCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGCG‑TCCGTGGCCGCTTCGTCGGCGCCTACAACGACAAGGACAGCTACCAGGATTACGCCGGTCGC  >  NC_002947/4766019‑4766298                                                                                                                                             |                                                                                                                                             ggTCGCCGCGGCCGACATGGCGCCCTACGACCGCGTCGAGATCGTGCGGGGCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCt                                                                                                                                      >  2:307465/1‑149 (MQ=255)                    gcgcCCTACGACCGCGTCGAGATCGTGCGGGGCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACaa                                                                                                                   <  2:106958/149‑1 (MQ=255)                     cgcCCTACGACCGCGTCGAGATCGTGCGGGGCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAAt                                                                                                                  >  5:131041/1‑149 (MQ=255)                                cgcgTCGAGATCGTGCGGGGCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCgcggcg                                                                                                        >  1:251429/1‑148 (MQ=255)                                   gTCGAGATCGTGCGGGGCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAg                                                                                                                            >  4:329586/1‑125 (MQ=255)                                   gTCGAGATCGTGCGGGGCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAg                                                                                                                            <  3:329586/125‑1 (MQ=255)                                      gagaTCGTGCGGGGCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGa                                                                                                 >  2:49217/1‑149 (MQ=255)                                       agaTCGTGCGGGGCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGa                                                                                                 >  6:142717/1‑148 (MQ=255)                                        gaTCGTGCGGGGCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGAtc                                                                                               <  6:131041/149‑1 (MQ=255)                                            gTGCGGGGCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCa                                                                                            <  8:158348/148‑1 (MQ=255)                                            gTGCGGGGCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCa                                                                                            <  2:251429/148‑1 (MQ=255)                                             tGCGGGGCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGc                                                                                          <  4:115400/149‑1 (MQ=255)                                              gCGGGGCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCg                                                                                         >  5:222258/1‑149 (MQ=255)                                                 gggCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGcc                                                                                      <  8:95215/149‑1 (MQ=255)                                                       caacGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTAAGCGGCCCACTGa                                                                                <  5:214581/146‑1 (MQ=255)                                                        aCCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGaa                                                                               <  7:333896/149‑1 (MQ=255)                                                        aCCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGaa                                                                               >  2:26556/1‑149 (MQ=255)                                                        aCCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTAACGCGGCGAACTCGATCTCAGCGGCCCACTGaa                                                                               >  7:110784/1‑149 (MQ=255)                                                               tgatgCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAAc                                                                        <  5:142717/149‑1 (MQ=255)                                                                 atgCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCTGCGAACTCGATCTCAGCGGCCCACTGAATGACAACgg                                                                      <  8:110784/149‑1 (MQ=255)                                                                 atgCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACg                                                                       <  4:66033/148‑1 (MQ=255)                                                                     aaGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGc                                                                  <  1:307465/149‑1 (MQ=255)                                                                     aaGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGc                                                                  <  1:49217/149‑1 (MQ=255)                                                                        gTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAAt                                                                              >  1:188945/1‑134 (MQ=255)                                                                        gTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAAt                                                                              <  2:188945/134‑1 (MQ=255)                                                                                 aCCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGCG‑TCCGTGGCCGc                                                     <  4:267526/149‑1 (MQ=255)                                                                                   ccGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGCG‑TCCGTGGCCGCtt                                                   >  6:115754/1‑149 (MQ=255)                                                                                        ggCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGCG‑TCCGTGGCCGCTtcgtcg                                              <  6:222258/149‑1 (MQ=255)                                                                                          cAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGCG‑TCCGTGGCCGCTTCGTCGgc                                            >  3:32069/1‑149 (MQ=255)                                                                                             ccATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGACGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGCG‑TCCGTGGCCGCTTCGTCGgc                                            <  4:68830/146‑1 (MQ=255)                                                                                             ccATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGACGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGCG‑TCCGTGGCCGCTTCGTCGgc                                            >  3:68830/1‑146 (MQ=255)                                                                                               aTCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGCG‑TCCGTGGCCGCTTCGTCGGCGCCTa                                       >  5:357685/1‑149 (MQ=255)                                                                                                tCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTcaccatgttgatggctgccgacgggttgccggcaccttgcatcatgccggtggcgccccgcacgatctcgacgcggtcgtagggcgccatgtcggccgcgg                                         >  4:287273‑M2/1‑46 (MQ=255)                                                                                                tCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTcaccatgttgatggctgccgacgggttgccggcaccttgcatcatgccggtggcgccccgcacgatctcgacgcggtcgtagggcgccatgtcggccgcgg                                         <  3:287273‑M2/147‑102 (MQ=255)                                                                                                tCAACATGGTGCGCAAACGCCCTACAAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGCG‑TCCGTGGCCGCTTCGTCGGCGCCTa                                       >  6:266419/1‑148 (MQ=255)                                                                                                   aCATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTcaccatgttgatggctgccgacgggttgccggcaccttgcatcatgccggtggcgccccgcacgatctc                                                                         <  2:330835‑M2/112‑70 (MQ=255)                                                                                                   aCATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTcaccatgttgatggctgccgacgggttgccggcaccttgcatcatgccggtggcgccccgcacgatctc                                                                         >  1:330835‑M2/1‑43 (MQ=255)                                                                                                   aCATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGCG‑TCCGTGGCCGCTTCGTCGGCGCCTACAAc                                   <  6:357685/149‑1 (MQ=255)                                                                                                    cATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGCGCTCCGTGGCCGCTTCGTCGGCGCCTACAAc                                   <  1:26556/149‑1 (MQ=255)                                                                                                      tGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGCG‑TCCGTGGCCGCTTCGTCGGCGCCTACAACGAc                                <  4:32069/149‑1 (MQ=255)                                                                                                       ggTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGCG‑TCCGTGGCCGCTTCGTCGGCGCCTACAACGAc                                >  6:327895/1‑148 (MQ=255)                                                                                                        gTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGCG‑TCCGTGGCCGCTTCGTCGGCGCCTACAACGACaa                              <  5:327895/149‑1 (MQ=255)                                                                                                            gcAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGCG‑TCCGTGGCCGCTTCGTCGGCGCCTACAACGACAAGGAc                          <  4:132859/149‑1 (MQ=255)                                                                                                                   cccTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTgg                                                                                                                        >  2:258151/1‑49 (MQ=255)                                                                                                                   cccTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTgg                                                                                                                        <  1:258151/49‑1 (MQ=255)                                                                                                                      accaaaGCATTTCCC‑GGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGCG‑TCCGTGGCCGCTTCGTCGGCGCCTACAACGACAAGGACAGCTACCAGGa               <  4:200435/145‑1 (MQ=255)                                                                                                                         cAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGCG‑TCCGTGGCCGCTTCGTCGGCGCCTACAACGACaa                              >  7:243991/1‑132 (MQ=255)                                                                                                                         cAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGCG‑TCCGTGGCCGCTTCGTCGGCGCCTACAACGACaa                              <  8:243991/132‑1 (MQ=255)                                                                                                                          aaGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGCG‑TCCGTGGCCGCTTCGTCGGCGCCTACAACGACAAGGACAGCTACCAGGATTa            >  4:157866/1‑149 (MQ=255)                                                                                                                          aaGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGCG‑TCCGTGGCCGCTTCGTCGGCGCCTACAACGACAAGGACAGCTACCAGGATTa            >  3:109660/1‑149 (MQ=255)                                                                                                                             gATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGCG‑TCCGTGGCCGCTTCGTCGGCGCCTACAACGACAAGGACAGCTACCAGGATTACGc         >  4:295946/1‑149 (MQ=255)                                                                                                                                    aGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGCG‑TCCGTGGCCGCTTCGTCGGCGCCTACAACGACAAGGACAGCTACCAGGATTACGCCGGTcgc  <  5:266419/149‑1 (MQ=255)                                                                                                                                        cAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGCG‑TCCGTGGCCGCTTCGTCGgc                                            >  8:176293/1‑103 (MQ=255)                                                                                                                                             |                                                                                                                                             GGTCGCCGCGGCCGACATGGCGCCCTACGACCGCGTCGAGATCGTGCGGGGCGCCACCGGCATGATGCAAGGTGCCGGCAACCCGTCGGCAGCCATCAACATGGTGCGCAAACGCCCTACCAAGGATTTCCAGGGCAGCGTCACCGGCTCGGCCGGCAGCTGGGACAATTACCGCGGCGAACTCGATCTCAGCGGCCCACTGAATGACAACGGCAGCG‑TCCGTGGCCGCTTCGTCGGCGCCTACAACGACAAGGACAGCTACCAGGATTACGCCGGTCGC  >  NC_002947/4766019‑4766298

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.