New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4797177 =	61 (1.150)	4 (0.080)	3/244	NT	6.2%	coding (806/1323 nt)	PP_4224	sensor histidine kinase
	?	NC_002947	4797220 =	62 (1.220)					coding (763/1323 nt)	PP_4224	sensor histidine kinase

GCCCAGACCCTCGAGCGTGAGCGGCGCCTGACCGACGATGCCGCGCATGAACTGCGCAGCCCGCTGACCGCGATCAAGACCCACCTGCAGGTGGCGCGCATGACCGACGGTGCCGTGCGCGAGCAGGCGCTGGAGCATGCCGAGCAGGGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4797328‑4797177 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcacCGTCGGTCATGCGCGCCACCTGCAGGTGGGTCTTGATCGCGGTCAGCGGGCTGCGCAGTTCATGCGCGGCATCGTCGGTCAGGCGCCGCTCACGCTCGAGGGTCTGGGCAATGCGCAGGAACAGCTGGTTCTGGGTCTCCAGCAAC  >  NC_002947/4797220‑4797365                                                                                                                                                                                                                                                                                                            GCCCAGACCCTCGAGCGTGAGCGGCGCCTGACCGACGATGCCGCGCATGAACTGCGCAGCCCGCTGACCGCGATCAAGACCCACCTGCAGGTGGCGCGCATGACCGACGGTGCCGTGCGCGAGCAGGCGCTGGAGCATGCCGAGCAGG                                                                                                                                                        <  7:71279/148‑1  CCCAGACCCTCGAGCGTGAGCGGCGCCTGACCGACGATGCCGCGCATGAACTGCGCAGCCCGCTGACCGCGATCAAGACCCACCTGCAGGTGGCGCGCATGACCGACGGTGCCGTGCGCGAGCAGGCGCTGGAGCATGCCGAGCAGGG                                                                                                                                                       >  4:201748/1‑148   CCAGACCCTCGAGCGTGAGCGGCGCCTGACCGACGATGCCGCGCATGAACTGCGCAGCCCGCTGACCGCGATCAAGACCCACCTGCAGGTGGCGCGCATGACCGGCGGTGCCGTGCGCGAGCAGGCGCTGGAGCATGCCGAGCAGGGCA                                                                                                                                                     <  1:263101/149‑1   CCAGACCCTCGAGCGTGAGCGGCGCCTGACCGACGATGCCGCGCATGAACTGCGCAGCCCGCTGACCGCGATCAAGACCCACCTGCAGGTGGCGCGCATGACCGACGGTGCCGTGCGCGAGCAGGCGCTGGAGCATGCCGAGCAGGGCA                                                                                                                                                     >  2:328719/1‑149                                                                                                        CCGACGGTGCCGTGCGCGAGCAGGCGCTGGAGCATGCCGAGCAGGGCACCGTCGGTCATGCGCGCCACCTGCAGGTGGGTCTTGATCGCGGTCAGCGGGCTGCGCAGTTCATGCGCGGCATCGTCGGTCAGGCGCCG                                                            <  5:94250/137‑1                                                                                                        CCGACGGTGCCGTGCGCGAGCAGGCGCTGGAGCATGCCGAGCAGGGCACCGTCGGTCATGCGCGCCACCTGCAGGTGGGTCTTGATCGCGGTCAGCGGGCTGCGCAGTTCATGCGCGGCATCGTCGGTCAGGCGCCG                                                            >  6:94250/1‑137                                                                                                                  CGTGCGCGAGCAGGCGCTGGAGCATGCCGAGCAGGGCACCGTCGGTCATGCGCGCCACCTGCAGGTGGGTCTTGATCGCGGTCAGTGGGCTGCGCAGTTCATGCGCGGCATCGTCGGTCAGGCGCCGCTCACGCTCGAGGGTCTGGGC                                       >  1:326110/1‑148                                                                                                                  CGTGCGCGAGCAGGCGCTGGAGCATGCCGAGCAGGGCACCGTCGGTCATGCGCGCCACCTGCAGGTGGGTCTTGATCGCGGTCAGCGGGCTGCGCAGTTCATGCGCGGCATCGTCGGTCAGGCGCCGCTCACGCTCGAGGGTCTGGGC                                       >  3:214814/1‑148                                                                                                                                                     GCACCGTCGGTCATGCGCGCCACCTGCAGGTGGGTCTTGATCGCGGTCAGCGGGCTGCGCAGTTCATGCGCGGCATCGTCGGTCAGGCGCCGCTCACGCTCGAGGGTCTGGGCAATGCGCAGGAACAGCTGGTTCTGGGTCTCCAGCA    >  8:279581/1‑148                                                                                                                                                      CACCGTCGGTCATGCGCGCCACCTGCAGGTGGGTCTTGATCGCGGTCAGCGGGCTGCGCAGTTCATGCGCGGCATCGTCGGGCAGGCGCCGCGCACGCTCGAGGGTCTGGGCAATGCGCAGGAACAGCTGGTTCGGGGTCGACAGCAcc  >  5:284124/1‑147                                                                                                                                                                                                                                                                                                            GCCCAGACCCTCGAGCGTGAGCGGCGCCTGACCGACGATGCCGCGCATGAACTGCGCAGCCCGCTGACCGCGATCAAGACCCACCTGCAGGTGGCGCGCATGACCGACGGTGCCGTGCGCGAGCAGGCGCTGGAGCATGCCGAGCAGGGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4797328‑4797177 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcacCGTCGGTCATGCGCGCCACCTGCAGGTGGGTCTTGATCGCGGTCAGCGGGCTGCGCAGTTCATGCGCGGCATCGTCGGTCAGGCGCCGCTCACGCTCGAGGGTCTGGGCAATGCGCAGGAACAGCTGGTTCTGGGTCTCCAGCAAC  >  NC_002947/4797220‑4797365

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.