New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4925742 =	52 (0.980)	4 (0.080)	4/244	NT	7.0%	coding (284/858 nt)	PP_4335	flagellar motor protein
	?	NC_002947	4925811 =	57 (1.120)					coding (215/858 nt)	PP_4335	flagellar motor protein

AAGGTTATTTCCCAGGCTTTGCTAGGGGTATTCAACGACCCCGAGCGCAGCATGAAGCCGATCCCGATTGGCGATGAGCAGCCGCTCAGCGTGCGCCCGGCCGAACCGCTGGTCAAAGACAGCGAGCAGACCGAAGCGGGCCTGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4925890‑4925742 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGA  >  NC_002947/4925811‑4925911                                                                                                                                                                                                                                                            AAGGTTATTTCCCAGGCTTTGCTAGGGGTATTCAACGACCCCGAGCGCAGCATGAAGCCGATCCCGATTGGCGATGAGCAGCCGCTCAGCGTGCGCCCGGCCGAACCGCTGGTCAAAGACAGCGAGCAGACCGAAGCGGGCCTGGCGGC                                                                                                       >  4:166756/1‑149                                                                          ATGAGCAGCCGCTCAGCGTGCGCCCGGCCGAACCGCTGGTCAAAGACAGCGAGCAGACCGAAGCGGGCCTGGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTA                                             <  3:53993/134‑1                                                                          ATGAGCAGCCGCTCAGCGTGCGCCCGGCCGAACCGCTGGTCAAAGACAGCGAGCAGACCGAAGCGGGCCTGGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTA                                             >  4:53993/1‑134                                                                                  CCGCTCAGCGTGCGCCCGGCCGAACCGCTGGTCAAAGACAGCGAGCAGACCGAAGCGGGCCTGGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTG                      >  1:168279/1‑149                                                                                                      CGAACCGCTGGTCAAAGACAGCGAGCAGACCGAAGCGGGCCTGGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGA  <  2:168279/149‑1                                                                                                                                                                                                                                                            AAGGTTATTTCCCAGGCTTTGCTAGGGGTATTCAACGACCCCGAGCGCAGCATGAAGCCGATCCCGATTGGCGATGAGCAGCCGCTCAGCGTGCGCCCGGCCGAACCGCTGGTCAAAGACAGCGAGCAGACCGAAGCGGGCCTGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4925890‑4925742 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGA  >  NC_002947/4925811‑4925911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.