New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4925742 =	52 (0.980)	4 (0.080)	4/244	NT	7.0%	coding (284/858 nt)	PP_4335	flagellar motor protein
	?	NC_002947	4925811 =	57 (1.120)					coding (215/858 nt)	PP_4335	flagellar motor protein

GGTCGCTGTTGATCAGGTCGCCGAAGGCATCGCGCACGTCATCGCTGATGGTTTTCAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGAGGAAATGGAATACATCACCACGAAGAAGGCGAACAGCAACGTGATG  >  NC_002947/4925668‑4925957                                                                                                                                                 |                                                                                                                                                   ggTCGCTGTTGATCAGGTCGCCGAAGGCATCGCGCACGTCATCGCTGATGGTTTTCAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCa                                                                                                                                               >  7:87635/1‑149 (MQ=255)            aTCAGGTCGCCGAAGGCATCGCGCACGTCATCGCTGATGGTTTTCAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCgg                                                                                                                                    >  3:294785/1‑149 (MQ=255)                 taggggtattcaacgaccccgagcgcagcatgaagccgatcccgattggcgatgagcaGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCAt                                                                                                                                              >  4:53993‑M1/59‑134 (MQ=255)                 taggggtattcaacgaccccgagcgcagcatgaagccgatcccgattggcgatgagcaGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCAt                                                                                                                                              <  3:53993‑M1/76‑1 (MQ=255)                 gTCGCCGAAGGCATCGCGCACGTCATCGCTGATGGTTTTCAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCg                                                                                                                               >  3:327103/1‑149 (MQ=255)                   cGCCGAAGGCATCGCGCACGTCATCGCTGATGGTTTTCAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGgctg                                                                                                                                                   <  1:334562/127‑1 (MQ=255)                   cGCCGAAGGCATCGCGCACGTCATCGCTGATGGTTTTCAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGgctg                                                                                                                                                   >  2:334562/1‑127 (MQ=255)                     ccGAAGGCATCGCGCACGTCATCGCTGATGGTTTTCAACGGGTCTACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGATGAGCGGCTGCTCATCGCCAATCTGGATAGGCt                                                                                                                            >  3:28822/1‑148 (MQ=255)                          ggCATCGCGCACGTCATCGCTGATGGTTTTCAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCAtgc                                                                                                                      <  4:340648/149‑1 (MQ=255)                            cATCGCGCACGTCATCGCTGATGGTTTTCAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCAtgctg                                                                                                                    <  8:87635/149‑1 (MQ=255)                                    aCGTCATCGCTGATGGTTTTCAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCggg                                                                                                            <  8:141398/149‑1 (MQ=255)                                        cATCGCTGATGGTTTTCAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCATGCTGAGCAGCCGCTCagcat                                                                                                                                           <  1:143722/114‑5 (MQ=255)                                        cATCGCTGATGGTTTTCAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCATGCTGAGCAGCCGCTCagcat                                                                                                                                           >  2:143722/1‑110 (MQ=255)                                        cATCGCTGATGGTTTTCAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCg                                                                                                        >  6:60045/1‑149 (MQ=255)                                          tCGCTGATTGTTTTCATCTGGTCGTCATTGGGCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGTGGTCGtt                                                                                                      <  2:210055/149‑1 (MQ=255)                                          tCGCTGATGGTTTTCAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGtt                                                                                                      >  5:209860/1‑149 (MQ=255)                                                   gTTTTCAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATAccc                                                                                              <  4:327103/148‑1 (MQ=255)                                                        cAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGc                                                                                                                             >  6:195470/1‑112 (MQ=255)                                                        cAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGc                                                                                                                             <  5:195470/112‑1 (MQ=255)                                                            gggTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGc                                                                                    <  5:60045/149‑1 (MQ=255)                                                               tCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTg                                                                                 >  3:166756/1‑149 (MQ=255)                                                                 gACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATAccc                                                                                              >  8:270039/1‑134 (MQ=255)                                                                 gACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATAccc                                                                                              <  7:270039/134‑1 (MQ=255)                                                                   cATTGGTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTgg                                                                                <  6:35999/146‑1 (MQ=255)                                                                   cATTGGTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTgg                                                                                >  5:35999/1‑146 (MQ=255)                                                                     atgagcagccgctcagcgtgcgcccggccgaaccgctggtcaaagacagcgagcagaccgaagcgggcctggcggcTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTa                                                                                           >  4:53993‑M2/77‑134 (MQ=255)                                                                     atgagcagccgctcagcgtgcgcccggccgaaccgctggtcaaagacagcgagcagaccgaagcgggcctggcggcTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTa                                                                                           <  3:53993‑M2/58‑1 (MQ=255)                                                                       ggTCGCCGCCAGGCCCGCTTCGGTCTGCGTCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAAt                                                                           >  1:196915/1‑148 (MQ=255)                                                                       ggTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATa                                                                          <  4:294785/148‑1 (MQ=255)                                                                         tCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGtt                                                                                                      >  2:206848/1‑118 (MQ=255)                                                                         tCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGtt                                                                                                      <  1:206848/118‑1 (MQ=255)                                                                         tCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCATTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATCCTGCGCTCGGGGTCGTTGAATACCACTAGCAAATCCTGGGAAATAAca                                                                       >  8:56870/1‑148 (MQ=255)                                                                           GCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCtt                                                                     >  4:166756‑M1/1‑149 (MQ=255)                                                                             ccgctcagcgtgcgcccggccgaaccgctggtcaaagacagcgagcagaccgaagcgggcctggcggcTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTg                                                                    >  1:168279‑M2/69‑149 (MQ=255)                                                                                       gCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTc                                                         >  6:167890/1‑149 (MQ=255)                                                                                        cTTCGGTGTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCTGGTTCTGCTTCATGCTGCGCTCGGGGGCGTTTAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCg                                                        <  7:56870/149‑1 (MQ=255)                                                                                           cGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGtt                                                      <  6:209860/148‑1 (MQ=255)                                                                                             gTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGAt                                                   >  2:120800/1‑149 (MQ=255)                                                                                                 cgaaccgctggtcaaagacagcgagcagaccgaagcgggcctggcggcTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGa                                                <  2:168279‑M2/101‑1 (MQ=255)                                                                                                    tCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGAgg                                              >  3:347917/1‑148 (MQ=255)                                                                                                      gCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGAGGaa                                            <  1:120800/148‑1 (MQ=255)                                                                                                       cTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGAGGAAAt                                          <  5:167890/149‑1 (MQ=255)                                                                                                        tGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGAGGAAATg                                         >  3:127899/1‑149 (MQ=255)                                                                                                          tCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGAGGAAATgg                                        <  2:196915/148‑1 (MQ=255)                                                                                                          tCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGATCAACGAgggtaagta                                       >  6:91581/1‑142 (MQ=255)                                                                                                            tttGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCt                                                          <  6:2345/128‑1 (MQ=255)                                                                                                            tttGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCt                                                          >  5:2345/1‑128 (MQ=255)                                                                                                            tttGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGAg                                               >  8:316632/1‑139 (MQ=255)                                                                                                            tttGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGAg                                               <  7:316632/139‑1 (MQ=255)                                                                                                            tttGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGAGGAAATGGaa                                      >  4:191936/1‑148 (MQ=255)                                                                                                              tGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGAGGAAATGGAATa                                    <  3:7553/148‑1 (MQ=255)                                                                                                               gACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGAGGAAATGGAATACa                                  >  6:104881/1‑149 (MQ=255)                                                                                                                aCCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGAGGAAATGGAATACa                                  >  6:279891/1‑148 (MQ=255)                                                                                                                 ccATCGGTTCGGCCGGGCGCACGCTGATCGGCTGCTCATAGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTTAATACCCCTAGCAAAGCCTGGTAAATAACCTTGTACTTACCCTCGTTGATCGAGGAAATGGAATACATc                                <  5:180376/149‑1 (MQ=255)                                                                                                                  cAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGAGGAAATGGAATACATca                               >  3:332413/1‑149 (MQ=255)                                                                                                                    gCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGAGGAAATg                                         <  5:330750/137‑1 (MQ=255)                                                                                                                    gCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGAGGAAATg                                         >  6:330750/1‑137 (MQ=255)                                                                                                                    gCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGAGGAAATGGAATACATcacc                             <  5:104881/149‑1 (MQ=255)                                                                                                                     cGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGAGGAAATGGAATACATcacca                            <  1:189581/149‑1 (MQ=255)                                                                                                                       gTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGa                                                <  7:107162/127‑1 (MQ=255)                                                                                                                       gTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGa                                                >  8:107162/1‑127 (MQ=255)                                                                                                                        ttCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCggg                                                                                                            <  4:205629/66‑1 (MQ=255)                                                                                                                        ttCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCggg                                                                                                            >  3:205629/1‑66 (MQ=255)                                                                                                                              cGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGAGGAAATGGAATACATCACCACGAAGAAgg                   <  4:127899/149‑1 (MQ=255)                                                                                                                               gggCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGAGGAAATGGAATACATCACCACGAAGAAGGc                  <  5:279891/149‑1 (MQ=255)                                                                                                                                    cACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGAGGAAATGGAATACATCACCACGAAGAAGGCGAACa             <  4:347917/149‑1 (MQ=255)                                                                                                                                         tGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGAGGAAATGGaa                                      >  8:57326/1‑119 (MQ=255)                                                                                                                                         tGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGAGGAAATGGAATACATCACCACGAAGAAGGCGAACAGCAAc        >  6:362773/1‑149 (MQ=255)                                                                                                                                                 tgctCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGAGGAAATGGAATACATCACCACGAAGAAGGCGAACAGCAACGtgatg  >  7:16095/1‑147 (MQ=255)                                                                                                                                                 |                                                                                                                                                   GGTCGCTGTTGATCAGGTCGCCGAAGGCATCGCGCACGTCATCGCTGATGGTTTTCAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGC‑TCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCGGGATCGGCTTCATGCTGCGCTCGGGGTCGTTGAATACCCCTAGCAAAGCCTGGGAAATAACCTTGTACTTACCCTCGTTGATCGAGGAAATGGAATACATCACCACGAAGAAGGCGAACAGCAACGTGATG  >  NC_002947/4925668‑4925957

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.