New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5087790 =	39 (0.740)	4 (0.080)	4/242	NT	9.3%	coding (1020/1464 nt)	astD	N‑succinylglutamate 5‑semialdehyde dehydrogenase
	?	NC_002947	5087833 =	41 (0.810)					coding (977/1464 nt)	astD	N‑succinylglutamate 5‑semialdehyde dehydrogenase

GGGGCGATGCACTGATCGCGCGCCTGGTCGAGGTGTGCAAAACCATCACGGTGGGGGCGTTCGATGAACAGCCGGCGCCTTTCATGGGCTCGGTGATTTCGCTGCAGGCGGCTCGGGCGCTGCTAGCCGCCCAGGTTGAACTGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5087938‑5087790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccTGCAGCGAAATCACCGAGCCCATGAAAGGCGCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGGCGCGCGATCAGTGCATCGCCCCAGGCGCCTTGCGGCACCAGCAGGCGCCGCGCGCAAGTGCAG  >  NC_002947/5087833‑5087979                                                                                                                                                                                                                                                                                                          GGGGCGATGCACTGATCGCGCGCCTGGTCGAGGTGTGCAAAACCATCACGGTGGGGGCGTTCGATGAACAGCCGGCGCCTTTCATGGGCTCGGTGATTTCGCTGCAGGCGGCTCGGGCGCTGCTAGCCGCCCAGGTTGAACTGGCCGC                                                                                                                                                      >  2:270412/1‑148                                                                                                      CTGCAGGCGGCTCGGGCGCTGCTAGCCGCCCAGGTTGAACTGGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGCGCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACC                                                                    >  5:15996/1‑129                                                                                                      CTGCAGGCGGCTCGGGCGCTGCTAGCCGCCCAGGGTGAACTGGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGCGCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACC                                                                    <  6:15996/129‑1                                                                                                       TGCAGGCGGCTCGGGCGCTGCTAGCCGCCCAGGTTGAACTGGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGCGCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGGCGCGCGATCAGTGCATCG                                               >  3:61498/1‑149                                                                                                         CAGGCGGCTCGGGCGCTGCTAGCCGCCCAGGTTGAACTGGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGCGCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGGCGCGCGATCAGTGCATCGCC                                             <  4:61498/149‑1                                                                                                                                                    CCTGCAGCGAAATCACCGAGCCCATGAAAGGCGCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGGCGCGCGATCAGTGCATCGCCCCAGGCGCCTTGCGGCACCAGCAGGCGCCGCGCGCAAGTGCAG  >  2:23637/1‑149                                                                                                                                                                                                                                                                                                          GGGGCGATGCACTGATCGCGCGCCTGGTCGAGGTGTGCAAAACCATCACGGTGGGGGCGTTCGATGAACAGCCGGCGCCTTTCATGGGCTCGGTGATTTCGCTGCAGGCGGCTCGGGCGCTGCTAGCCGCCCAGGTTGAACTGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5087938‑5087790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccTGCAGCGAAATCACCGAGCCCATGAAAGGCGCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGGCGCGCGATCAGTGCATCGCCCCAGGCGCCTTGCGGCACCAGCAGGCGCCGCGCGCAAGTGCAG  >  NC_002947/5087833‑5087979

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.