New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5087790 =	39 (0.740)	4 (0.080)	4/242	NT	9.3%	coding (1020/1464 nt)	astD	N‑succinylglutamate 5‑semialdehyde dehydrogenase
	?	NC_002947	5087833 =	41 (0.810)					coding (977/1464 nt)	astD	N‑succinylglutamate 5‑semialdehyde dehydrogenase

AGTCGGCGTAGCGGATCACCTGCAACAGCGGGCCGAAAAACTCTTCGTCCGGGCGGTCAGCCACGGCAGTGACATCGACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGGCGCGCGATCAGTGCA  >  NC_002947/5087642‑5087931                                                                                                                                                      |                                                                                                                                                 aGTCGGCGTAGCGGATCACCTGCAACAGCGGGCCGAAAAACTCTTCGTCCGGGCGGTCAGCCACGGCAGTGACATCGACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTg                                                                                                                                                  <  5:154118/149‑1 (MQ=255)   ctgcacttgcgcgcggcgcctgctggtgccgcaaggcgcctggggcgatgcactgatcgcgcgcctggtcgaggtgtgcaaaaccatcacggtgggggcgttcgatgaacagccggcgcctttcatgggctcggtgatttcgctgcagg                                                                                                                                                 >  2:23637‑M1/148‑149 (MQ=255)      gCGTAGCGGATCACCTGCAACAGCGGGCCGAAAAACTCTTCGTCCGGGCGGTCAGCCACGGCAGTGACATCGACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTggcggc                                                                                                                                             <  1:201513/149‑1 (MQ=255)        gTAGCGGATCACCTGCAACAGCGGGCCGAAAAACTCTTCGTCCGGGCGGTCAGCCACGGCAGTGACATCGACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTggcggc                                                                                                                                             >  3:134176/1‑147 (MQ=255)        gTAGCGGATCACCTGCAACAGCGGGCCGAAAAACTCTTCGTCCGGGCGGTCAGCCACGGCAGTGACATCGACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCa                                                                                                                                           <  6:65253/149‑1 (MQ=255)            cGGATCACCTGCAACAGCGGGCCGAAAAACTCTTCGTCCGGGCGGTCAGCCACGGCAGTGACATCGACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGtt                                                                                                                                        >  1:53794/1‑148 (MQ=255)                       cAACAGCGGGCCGAAAAACTCTTCGTCCGGGCGGTCAGCCACGGCAGTGACATCGACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGggcgg                                                                                                                            <  2:53794/149‑1 (MQ=255)                           aGCGGGCCGAAAAACTCTTCGTCCGGGCGGTCAGCCACGGCAGTGACATCGACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CACCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTag                                                                                                                        >  1:46342/1‑149 (MQ=255)                                  cGAAAAACTCTTCGTCCGGGCGGTCAGCCACGGCAGTGACATCGACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGTCAGTTCAACCTGGGCGGCTAGCAGCGcc                                                                                                                 >  6:121588/1‑149 (MQ=255)                                              ggcgatgcactgatcgcgcgcctggtcgaggtgtgcaaaaccatcacggtgggggcgttcgatgaacagccggcgcctttcatgggctcggtgatttcgctgcaGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTg                                                                                                      <  4:61498‑M1/45‑1 (MQ=255)                                                cgatgcactgatcgcgcgcctggtcgaggtgtgcaaaaccatcacggtgggggcgttcgatgaacagccggcgcctttcatgggctcggtgatttcgctgcaGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCa                                                                                                    >  3:61498‑M1/103‑149 (MQ=255)                                                        gTCAGCCACGGCAGTGACATCGACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCa                                                                                           >  2:280654/1‑149 (MQ=255)                                                         tCAGCCACGGCAGTGACATCGACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCAc                                                                                          >  5:177186/1‑149 (MQ=255)                                                           aGCCACGGCAGTGACATCGACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCAcc                                                                                         <  1:280654/148‑1 (MQ=255)                                                                     ggtcgaggtgtgcaaaaccatcacggtgggggcgttcgatgaacagccggcgcctttcatgggctcggtgatttcgctgcaGGCGGCCAGTTCACCCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAg                                                                                                   <  6:15996‑M1/48‑1 (MQ=255)                                                                     ggtcgaggtgtgcaaaaccatcacggtgggggcgttcgatgaacagccggcgcctttcatgggctcggtgatttcgctgcaGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAg                                                                                                   >  5:15996‑M1/82‑129 (MQ=255)                                                                      tGACATCGACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGaaa                                                                             <  7:21145/149‑1 (MQ=255)                                                                           tCGACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGgc‑‑‑gc                                                                     >  2:265477/1‑149 (MQ=255)                                                                             gACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTg                                                                                                      <  4:334167/117‑1 (MQ=255)                                                                             gACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTg                                                                                                      >  3:334167/1‑117 (MQ=255)                                                                              aCAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGTCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCgg                                                                  <  5:121588/149‑1 (MQ=255)                                                                                   gCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGt                                                              >  2:225770/1‑148 (MQ=255)                                                                                     ccGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCACCACCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGtt                                                             >  1:270412/1‑148 (MQ=255)                                                                                      cGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CACCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCAt                                                          <  2:46342/149‑1 (MQ=255)                                                                                           tCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAAc                                                     >  7:165634/1‑149 (MQ=255)                                                                                              gcagTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGcc                                                  <  6:177186/149‑1 (MQ=255)                                                                                               cagTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGccc                                                 >  3:245795/1‑149 (MQ=255)                                                                                                      gcaTCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCAt                                                          >  6:146969/1‑133 (MQ=255)                                                                                                      gcaTCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCAt                                                          <  5:146969/133‑1 (MQ=255)                                                                                                              cTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑TCCg                                                                   <  6:63346/116‑1 (MQ=255)                                                                                                              cTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGttt                                  >  7:143024/1‑149 (MQ=255)                                                                                                                     tGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATc                                                                                            >  4:265719/1‑87 (MQ=255)                                                                                                                     tGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATc                                                                                            <  3:265719/87‑1 (MQ=255)                                                                                                                       aGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCt                         <  4:134176/149‑1 (MQ=255)                                                                                                                        gTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTc                        <  4:245795/149‑1 (MQ=255)                                                                                                                         tCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTc                        <  8:143024/148‑1 (MQ=255)                                                                                                                           aTTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGAc                     >  8:322775/1‑149 (MQ=255)                                                                                                                           aTTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGAc                     <  1:265477/149‑1 (MQ=255)                                                                                                                                cagcagTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGgc                <  1:225770/149‑1 (MQ=255)                                                                                                                                 agcagTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACGGAGCCATAGAAAGGCATAAGCGGATGTTCATCGACCGCCCCCACCGTGATGGTTTTCCACACGTCGACCAg                  >  1:112179/1‑149 (MQ=255)                                                                                                                                      tttCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATc                                                         >  2:81663/1‑102 (MQ=255)                                                                                                                                      tttCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATc                                                         <  1:81663/102‑1 (MQ=255)                                                                                                                                             gCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTg                                >  4:132436/1‑121 (MQ=255)                                                                                                                                              ccACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGGCGCGCGATCAGTg    >  2:113059/1‑148 (MQ=255)                                                                                                                                               cACCTTTGGCGGCCAGTTCAACATGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTAGACAAGGCGCGCGATCAGTGCa  >  5:280017/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                 AGTCGGCGTAGCGGATCACCTGCAACAGCGGGCCGAAAAACTCTTCGTCCGGGCGGTCAGCCACGGCAGTGACATCGACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGGCGCGCGATCAGTGCA  >  NC_002947/5087642‑5087931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.