New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5087790 =	39 (0.740)	4 (0.080)	4/242	NT	9.3%	coding (1020/1464 nt)	astD	N‑succinylglutamate 5‑semialdehyde dehydrogenase
	?	NC_002947	5087833 =	41 (0.810)					coding (977/1464 nt)	astD	N‑succinylglutamate 5‑semialdehyde dehydrogenase

CGTCCGGGCGGTCAGCCACGGCAGTGACATCGACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGGCGCGCGATCAGTGCATCGCCCCAGGCGCCTTGCGGCACCAGCAGGCGCCGCGCGCAAGTGCAG  >  NC_002947/5087687‑5087979                                                                                                                                                    |                                                                                                                                                      ggcgatgcactgatcgcgcgcctggtcgaggtgtgcaaaaccatcacggtgggggcgttcgatgaacagccggcgcctttcatgggctcggtgatttcgctgcaGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTg                                                                                                                                                      <  4:61498‑M1/45‑1 (MQ=255)   cgatgcactgatcgcgcgcctggtcgaggtgtgcaaaaccatcacggtgggggcgttcgatgaacagccggcgcctttcatgggctcggtgatttcgctgcaGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCa                                                                                                                                                    >  3:61498‑M1/103‑149 (MQ=255)           gTCAGCCACGGCAGTGACATCGACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCa                                                                                                                                           >  2:280654/1‑149 (MQ=255)            tCAGCCACGGCAGTGACATCGACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCAc                                                                                                                                          >  5:177186/1‑149 (MQ=255)              aGCCACGGCAGTGACATCGACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCAcc                                                                                                                                         <  1:280654/148‑1 (MQ=255)                        ggtcgaggtgtgcaaaaccatcacggtgggggcgttcgatgaacagccggcgcctttcatgggctcggtgatttcgctgcaGGCGGCCAGTTCACCCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAg                                                                                                                                                   <  6:15996‑M1/48‑1 (MQ=255)                        ggtcgaggtgtgcaaaaccatcacggtgggggcgttcgatgaacagccggcgcctttcatgggctcggtgatttcgctgcaGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAg                                                                                                                                                   >  5:15996‑M1/82‑129 (MQ=255)                         tGACATCGACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGaaa                                                                                                                             <  7:21145/149‑1 (MQ=255)                              tCGACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGgc‑‑‑gc                                                                                                                     >  2:265477/1‑149 (MQ=255)                                gACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTg                                                                                                                                                      >  3:334167/1‑117 (MQ=255)                                gACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTg                                                                                                                                                      <  4:334167/117‑1 (MQ=255)                                 aCAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGTCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCgg                                                                                                                  <  5:121588/149‑1 (MQ=255)                                      gCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGt                                                                                                              >  2:225770/1‑148 (MQ=255)                                        ccGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCACCACCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGtt                                                                                                             >  1:270412/1‑148 (MQ=255)                                         cGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CACCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCAt                                                                                                          <  2:46342/149‑1 (MQ=255)                                              tCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAAc                                                                                                     >  7:165634/1‑149 (MQ=255)                                                 gcagTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGcc                                                                                                  <  6:177186/149‑1 (MQ=255)                                                  cagTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGccc                                                                                                 >  3:245795/1‑149 (MQ=255)                                                         gcaTCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCAt                                                                                                          >  6:146969/1‑133 (MQ=255)                                                         gcaTCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCAt                                                                                                          <  5:146969/133‑1 (MQ=255)                                                                 cTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑TCCg                                                                                                                   <  6:63346/116‑1 (MQ=255)                                                                 cTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGttt                                                                                  >  7:143024/1‑149 (MQ=255)                                                                        tGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATc                                                                                                                                            <  3:265719/87‑1 (MQ=255)                                                                        tGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATc                                                                                                                                            >  4:265719/1‑87 (MQ=255)                                                                          aGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCt                                                                         <  4:134176/149‑1 (MQ=255)                                                                           gTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTc                                                                        <  4:245795/149‑1 (MQ=255)                                                                            tCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTc                                                                        <  8:143024/148‑1 (MQ=255)                                                                              aTTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGAc                                                                     <  1:265477/149‑1 (MQ=255)                                                                              aTTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGAc                                                                     >  8:322775/1‑149 (MQ=255)                                                                                   cagcagTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGgc                                                                <  1:225770/149‑1 (MQ=255)                                                                                    agcagTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACGGAGCCATAGAAAGGCATAAGCGGATGTTCATCGACCGCCCCCACCGTGATGGTTTTCCACACGTCGACCAg                                                                  >  1:112179/1‑149 (MQ=255)                                                                                         tttCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATc                                                                                                         <  1:81663/102‑1 (MQ=255)                                                                                         tttCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATc                                                                                                         >  2:81663/1‑102 (MQ=255)                                                                                                gCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTg                                                                                >  4:132436/1‑121 (MQ=255)                                                                                                 ccACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGGCGCGCGATCAGTg                                                    >  2:113059/1‑148 (MQ=255)                                                                                                  cACCTTTGGCGGCCAGTTCAACATGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTAGACAAGGCGCGCGATCAGTGCa                                                  >  5:280017/1‑149 (MQ=255)                                                                                                    ctgcaggcggctcgggcgctgctagccgcccaggttgaactggccgccTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGAcc                                                                    >  5:15996‑M2/49‑129 (MQ=255)                                                                                                    ctgcaggcggctcgggcgctgctagccgcccagggtgaactggccgccTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGAcc                                                                    <  6:15996‑M2/81‑1 (MQ=255)                                                                                                     tgcaggcggctcgggcgctgctagccgcccaggttgaactggccgccTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGGCGCGCGATCAGTGCATCg                                               >  3:61498‑M2/48‑149 (MQ=255)                                                                                                       caggcggctcgggcgctgctagccgcccaggttgaactggccgccTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGGCGCGCGATCAGTGCATCGcc                                             <  4:61498‑M2/104‑1 (MQ=255)                                                                                                          GCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGGCGCGCGATCAGTGCATCGcccc                                           >  2:270412‑M1/1‑148 (MQ=255)                                                                                                                 gTTCAACCTGGGCGGCTAGCAGCCACCGAGCCGCCTGAAGCCAAATAACAGAGCACATGAAAGGC‑‑‑GCCGTCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACAGCGCGAACAGGCGCGCGATCTGTGCATCGCCCCAGGCGCCt                                   >  8:58025/1‑149 (MQ=255)                                                                                                                  ttCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTg                                                                                >  5:102112/1‑103 (MQ=255)                                                                                                                  ttCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTg                                                                                <  6:102112/103‑1 (MQ=255)                                                                                                                     aaCCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGGCGCGCGATCAGTGCATCGCCCCAGGCGCCTTGCg                               >  4:25772/1‑149 (MQ=255)                                                                                                                          gggCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGGCGCGCGATCAGTGCATCGCCCCAGGCGCCTTGCGGCAc                           >  5:107209/1‑148 (MQ=255)                                                                                                                               gcTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGGCGCGCGATCAGTGCATCGCCCCAGGCGCCTTGCGGCACcagcag                     <  3:25772/149‑1 (MQ=255)                                                                                                                                 tAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGGCGCGCGATCAGTGCATCGCCCCAGGCGCCTTGCgg                              <  6:197396/138‑1 (MQ=255)                                                                                                                                 tAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGGCGCGCGATCAGTGCATCGCCCCAGGCGCCTTGCgg                              >  5:197396/1‑138 (MQ=255)                                                                                                                                 tAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGGCGCGCGATCAGTGCATCGCCCCAGGCGCCTTGCGGCACCAGCAGgc                   >  1:329803/1‑149 (MQ=255)                                                                                                                                      gcgcCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGGCGCGCGATCAGTGCATCGccc                                            <  6:193559/119‑1 (MQ=255)                                                                                                                                      gcgcCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGGCGCGCGATCAGTGCATCGccc                                            >  5:193559/1‑119 (MQ=255)                                                                                                                                                  ccTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGGCGCGCGATCAGTGCATCGCCCCAGGCGCCTTGCGGCACCAGCAGGCGCCGCGCGCAAGTGCAg  >  2:23637‑M2/3‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CGTCCGGGCGGTCAGCCACGGCAGTGACATCGACAATGCCCGGGGTCAGCAGTGCAGCATCGGCCTGCGGCTGAGTCATTTCCAGCAGTTTCA‑CGCCACCTTTGGCGGCCAGTTCAACCTGGGCGGCTAGCAGCGCCCGAGCCGCCTGCAGCGAAATCACCGAGCCCATGAAAGGC‑‑‑GCCGGCTGTTCATCGAACGCCCCCACCGTGATGGTTTTGCACACCTCGACCAGGCGCGCGATCAGTGCATCGCCCCAGGCGCCTTGCGGCACCAGCAGGCGCCGCGCGCAAGTGCAG  >  NC_002947/5087687‑5087979

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.