New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5177969 =	41 (0.780)	6 (0.120)	5/244	NT	13.6%	coding (16/1221 nt)	PP_4553	ECF family RNA polymerase sigma‑70 factor
	?	NC_002947	5178009 =	37 (0.730)					coding (479/486 nt)	PP_4554	hypothetical protein

CGTGCCTGGCACTGGAATGCCACCGACTGCCGGGCCCATGAAGAAATGGGCTTCCACCAGGGCTGGGGAGAAAGCCTGGACCGCCTGGTGGAGGTGGTGACCCAGCGGATGCCCGACTGATGGCCGCACTGGCCCAGGTGCGTGCCGAAGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5178121‑5177969 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtcgGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCA  >  NC_002947/5178009‑5178155                                                                                                                                                                                                                                                                                                              CGTGCCTGGCACTGGAATGCCACCGACTGCCGGGCCCATGAAGAAATGGGCTTCCACCAGGGCTGGGGAGAAAGCCTGGACCGCCTGGTGGAGGGGGTGACCCAGCGGATGCCCGACTGATGGCCGCACTGGCCCAGGTGCGTGCCGAA                                                                                                                                                         <  2:43245/149‑1                                                                                                              TGCCCGACTGATGGCCGCACTGGCCCAGGTGCGTGCCGAAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTT                                                                                                          >  7:267555/1‑87                                                                                                              TGCCCGACTGATGGCCGCACTGGCCCAGGTGCGTGCCGAAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTT                                                                                                          <  8:267555/87‑1                                                                                                                 CCGACTGATGGCCGCACTGGCCCAGGTGCGTGCCGAAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCTCAGCCCTGGTGG                                                                                         <  3:294853/101‑1                                                                                                                 CCGACTGATGGCCGCACTGGCCCAGGTGCGTGCCGAAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCTCAGCCCTGGTGG                                                                                         >  4:294853/1‑101                                                                                                                 CCGACTGATGGCCGCACTGGCCCAGGTGCGTGCCGAAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAG                                         >  5:80423/1‑149                                                                                                                                           TGCGTGCCGAAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCC               <  6:80423/149‑1                                                                                                                                                      GTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGAGGTGTAGCGGGTTTTGCCCTGTTCCTCGT    >  5:86807/1‑149                                                                                                                                                         GGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCA  >  7:153604/1‑148                                                                                                                                                                                                                                                                                                              CGTGCCTGGCACTGGAATGCCACCGACTGCCGGGCCCATGAAGAAATGGGCTTCCACCAGGGCTGGGGAGAAAGCCTGGACCGCCTGGTGGAGGTGGTGACCCAGCGGATGCCCGACTGATGGCCGCACTGGCCCAGGTGCGTGCCGAAGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5178121‑5177969 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtcgGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCA  >  NC_002947/5178009‑5178155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.