New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5177969 =	41 (0.780)	6 (0.120)	5/244	NT	13.6%	coding (16/1221 nt)	PP_4553	ECF family RNA polymerase sigma‑70 factor
	?	NC_002947	5178009 =	37 (0.730)					coding (479/486 nt)	PP_4554	hypothetical protein

CGGCAATGAAGAAGGCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCA  >  NC_002947/5177861‑5178155                                                                                                                                                     |                                                                                                                                                   ctggcactggaatgccaccgactgccgggcccatgaagaaatgggcttccaccagggctggggagaaagcctggaccgcctggtggaggtggtgacccagcggatgccCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCgg                                                                                                                                                    >  5:80423‑M1/109‑149 (MQ=255) cGGCAATGAAGAAGGCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCgg                                                                                                                                                    <  7:79680/149‑1 (MQ=255)  ggCAATGAAGAAGGCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCggg                                                                                                                                                   >  5:294697/1‑149 (MQ=255)     aaTGAAGAAGGCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCAt                                                                                                                                                >  1:272954/1‑149 (MQ=255)     aaTGAAGAAGGCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCAt                                                                                                                                                >  6:173044/1‑149 (MQ=255)       tGAAGAAGGCATCATGCATGGTCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATcc                                                                                                                                              >  3:148204/1‑149 (MQ=255)         aagaagGCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGc                                                                                                                                            >  3:343809/1‑149 (MQ=255)            aagGCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTgg                                                                                                                                         <  5:173044/149‑1 (MQ=255)             agGCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTggg                                                                                                                                        >  4:292620/1‑149 (MQ=255)              ggCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATc                                                                                                                                               <  7:276995/141‑1 (MQ=255)              ggCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATc                                                                                                                                               >  8:276995/1‑141 (MQ=255)               gCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTgg                                                                                                                                         <  6:84493/146‑1 (MQ=255)               gCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTgg                                                                                                                                         >  5:84493/1‑146 (MQ=255)                       cATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCATGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTC                                                                                                                              >  2:60096‑M1/1‑149 (MQ=255)                        aTGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCC                                                                                                                             >  3:17208‑M1/1‑149 (MQ=255)                        aTGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCC                                                                                                                             >  3:266905‑M1/1‑149 (MQ=255)                         tGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCA                                                                                                                            <  3:292620‑M1/149‑1 (MQ=255)                           gCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACC                                                                                                                          <  6:294697‑M1/149‑1 (MQ=255)                           gCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCAC                                                                                                                           >  5:42451‑M1/1‑148 (MQ=255)                            cctcctCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTgg                                                                                                                                         <  7:63190/133‑1 (MQ=255)                            cctcctCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTgg                                                                                                                                         >  8:63190/1‑133 (MQ=255)                                ctcGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCg                                                                                                                     >  2:17675/1‑149 (MQ=255)                                ctcGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCg                                                                                                                     <  4:17208/149‑1 (MQ=255)                                  cGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAAGCGGt                                                                                                                   >  2:316153/1‑149 (MQ=255)                                     ccAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCa                                                                                                                <  2:272954/149‑1 (MQ=255)                                     ccAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAAGCGGTCCa                                                                                                                <  1:316153/149‑1 (MQ=255)                                               aTCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTcc                                                                                                      <  4:148204/149‑1 (MQ=255)                                                 ccaccagggctgaggagaaagcctggaccgcctggtggaggtggtgacccagcggatgccCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCgg                                                                                                                                                    <  3:294853‑M1/41‑1 (MQ=255)                                                 ccaccagggctgaggagaaagcctggaccgcctggtggaggtggtgacccagcggatgccCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCgg                                                                                                                                                    >  4:294853‑M1/61‑101 (MQ=255)                                                       gCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCa                                                                                                   <  4:87396/144‑1 (MQ=255)                                                       gCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAgagat                                                                                              >  3:87396/1‑145 (MQ=255)                                                             ggATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGgctggggagaaagcctggaccgcctggtgga                                                                                        <  4:343809‑M1/149‑32 (MQ=255)                                                              gATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGaa                                                                                       <  4:266905/149‑1 (MQ=255)                                                                tCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTcacca                                                                                                                                  >  1:298519/1‑104 (MQ=255)                                                                tCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTcacca                                                                                                                                  <  2:298519/104‑1 (MQ=255)                                                                  aaagcctggaccgcctggtggaggtggtgacccagcggatgccCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCa                                                                                                                                                 <  8:267555‑M1/44‑1 (MQ=255)                                                                  aaagcctggaccgcctggtggaggtggtgacccagcggatgccCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCa                                                                                                                                                 >  7:267555‑M1/44‑87 (MQ=255)                                                                          cAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCcctg                                                                                             >  6:253794‑M2/1‑127 (MQ=255)                                                                          cAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCcctg                                                                                             <  5:253794‑M2/131‑5 (MQ=255)                                                                                  gccgcGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATttc                                                                              >  3:100822/1‑138 (MQ=255)                                                                                  gccgcGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATttc                                                                              <  4:100822/138‑1 (MQ=255)                                                                                      cgACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCa                                                               <  2:73736/149‑1 (MQ=255)                                                                                          tCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGgctggggagaaagcctggaccgcctggtgg                                                                                         >  3:236553‑M1/1‑89 (MQ=255)                                                                                          tCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGgctggggagaaagcctggaccgcctggtgg                                                                                         <  4:236553‑M1/119‑31 (MQ=255)                                                                                          tCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCg                                                           >  5:318828/1‑149 (MQ=255)                                                                                                   tACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTc                                                  <  1:17675/149‑1 (MQ=255)                                                                                                         tgcccgactgatggccgcactggcccaggtgcgtgccgaagtcgGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCttt                                                                                                          >  7:267555‑M2/45‑87 (MQ=255)                                                                                                         tgcccgactgatggccgcactggcccaggtgcgtgccgaagtcgGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCttt                                                                                                          <  8:267555‑M2/43‑1 (MQ=255)                                                                                                            ccgactgatggccgcactggcccaggtgcgtgccgaagtcgGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCTCAGCCCtggtgg                                                                                         <  3:294853‑M2/60‑1 (MQ=255)                                                                                                            ccgactgatggccgcactggcccaggtgcgtgccgaagtcgGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCTCAGCCCtggtgg                                                                                         >  4:294853‑M2/42‑101 (MQ=255)                                                                                                            ccgactgatggccgcactggcccaggtgcgtgccgaagtcgGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAg                                         >  5:80423‑M2/42‑149 (MQ=255)                                                                                                                 TTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCCCCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACg                                    <  2:43245‑M1/149‑1 (MQ=255)                                                                                                                     gcacgcacCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCg                                <  6:318828/149‑1 (MQ=255)                                                                                                                       actcacCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGAGGTCCAGGCTTTCTCCCCAGCCCTGGTGGACGCCCAGTTCTTCATGGGCCCGGCAGGCGGTGGCAGTCCAGAGCCAGGCACGGGCGgt                              >  6:14461/4‑149 (MQ=255)                                                                                                                       acgcacCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGgt                              <  6:42451/149‑1 (MQ=255)                                                                                                                           acCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAg                          >  3:192469/1‑149 (MQ=255)                                                                                                                             cTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCg                        >  4:204146/1‑149 (MQ=255)                                                                                                                             cTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCAAGGAACGTGCGGTGTAGCg                        >  6:260085/1‑149 (MQ=255)                                                                                                                                ggCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCCGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCgg                       <  7:177550/147‑1 (MQ=255)                                                                                                                                 gCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGtt                    >  1:94614/1‑149 (MQ=255)                                                                                                                                  ccAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGc                                       <  6:160973/129‑1 (MQ=255)                                                                                                                                   cAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCg                                >  8:105548/1‑135 (MQ=255)                                                                                                                                   cAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCg                                <  7:105548/135‑1 (MQ=255)                                                                                                                                      tgcgtgccgaagtcgGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGcc               <  6:80423‑M2/134‑1 (MQ=255)                                                                                                                                           ccATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGtt          <  3:204146/149‑1 (MQ=255)                                                                                                                                                 gtcgGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGAGGTGTAGCGGGTTTTGCCCTGTTCCTCGt    >  5:86807‑M2/5‑149 (MQ=255)                                                                                                                                                    gGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCa  >  7:153604‑M2/2‑148 (MQ=255)                                                                                                                                                     ggCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTg                                             >  8:132683/1‑104 (MQ=255)                                                                                                                                                     ggCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTg                                             <  7:132683/104‑1 (MQ=255)                                                                                                                                                     ggCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCa  >  1:325121/1‑147 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CGGCAATGAAGAAGGCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCA  >  NC_002947/5177861‑5178155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.