New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5184749 =	40 (0.760)	4 (0.080)	4/246	NT	9.7%	coding (1711/1716 nt)	aceK	isocitrate dehydrogenase kinase/phosphatase
	?	NC_002947	5184813 =	36 (0.700)					coding (1647/1716 nt)	aceK	isocitrate dehydrogenase kinase/phosphatase

GGCGATACGTGAGGGGAAAGTGATCGATGTGTTTCCGTATCGGCGCAAGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5184801‑5184749 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTCGGGGAACACATCATGCGGCCCGATCGAGTACCACGGCTCGCCCGACATTTCGTC  >  NC_002947/5184813‑5184959                                                                                                                                                                                                          GGCGATACGTGAGGGGAAAGTGATCGATGTGTTTCCGTATCGGCGCAAGGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTCGGG                                                     >  8:161235/1‑149    GATACGTGAGGGGAAAGTGATCGATGTGTTTCCGTATCGGCGCAAGGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTCGGGGAA                                                  <  7:161235/149‑1         GTGAGGGGAAAGTGATCGATGTGTTTCCGTATCGGCGCAAGGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTCGGGGAACACAT                                             >  3:324593/1‑149                  AAGTGATCGATGTGTTTCCGTATCGGCGCAAGGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTCGGGGAACACATCATGCGGCC                                    <  4:324593/149‑1                                                   CCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTCGGGGAACACATCATGCGGCCCGATCGAGTACCACGGCTCGCCCGACATTTCGT   >  6:80210/1‑149                                                    CCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTCGGGTAACACATCATGCGGCCCGATCGAGTACCACGGCTCGCCCGACATTTCGTC  <  2:155871/149‑1                                                                                                                                                                                                          GGCGATACGTGAGGGGAAAGTGATCGATGTGTTTCCGTATCGGCGCAAGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5184801‑5184749 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTCGGGGAACACATCATGCGGCCCGATCGAGTACCACGGCTCGCCCGACATTTCGTC  >  NC_002947/5184813‑5184959

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.