New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5184749 =	40 (0.760)	4 (0.080)	4/246	NT	9.7%	coding (1711/1716 nt)	aceK	isocitrate dehydrogenase kinase/phosphatase
	?	NC_002947	5184813 =	36 (0.700)					coding (1647/1716 nt)	aceK	isocitrate dehydrogenase kinase/phosphatase

ACGGTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTCGGGGAACACATCATGCGGCCCGATCGAGTACCACGGCTCGCCCGACATTTCGTC  >  NC_002947/5184670‑5184959                                                                                                                                                |                                                                                                                                                   aCGGTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCa                                                                                                                                               <  5:258535/149‑1 (MQ=255)    gTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGGTCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTc                                                                                                                                                 <  5:361716/144‑1 (MQ=255)    gTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGGTCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTc                                                                                                                                                 >  6:361716/1‑144 (MQ=255)            aGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGt                                                                                                                                    <  8:299772/149‑1 (MQ=255)               tGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTAACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCa                                                                                                                                  >  2:58640/1‑148 (MQ=255)                         tttGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGcccc                                                                                                                                                    >  3:273957/1‑120 (MQ=255)                         tttGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGcccc                                                                                                                                                    <  4:273957/120‑1 (MQ=255)                                 agaTGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGc                                                                                                               <  1:58640/149‑1 (MQ=255)                                       aGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGa                                                                                                         <  8:177892/149‑1 (MQ=255)                                        gtgtTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGaa                                                                                                        >  5:159589/1‑149 (MQ=255)                                               aaGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAAccgc                                                                                                 >  7:25444/1‑149 (MQ=255)                                                  gCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATcc                                                                                                                                        >  2:66341/1‑107 (MQ=255)                                                  gCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATcc                                                                                                                                        <  1:66341/107‑1 (MQ=255)                                                       aCAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGcc                                                                                         >  4:186298/1‑149 (MQ=255)                                                                    cgcTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCCGGc                                                                                          >  6:53612/1‑135 (MQ=255)                                                                    cgcTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCCGGc                                                                                          <  5:53612/135‑1 (MQ=255)                                                                       tGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCAt                                                                                                                     >  6:136699/1‑105 (MQ=255)                                                                       tGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCAt                                                                                                                     <  5:136699/105‑1 (MQ=255)                                                                         aTTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCAGATCGGCAAACAGaaa                                                                       >  1:155871/1‑149 (MQ=255)                                                                             aCCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTc                                                                                                                                                 >  8:308880/1‑71 (MQ=255)                                                                             aCCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTc                                                                                                                                                 <  7:308880/71‑1 (MQ=255)                                                                             aCCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAAcggc                                                                   >  4:64779/1‑149 (MQ=255)                                                                             aCCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCGGAACAACCGCCGCTGGCCCATATCGGCAACCAGAACcggc                                                                   >  5:335414/1‑149 (MQ=255)                                                                                         gcCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTct                                                       >  4:178308/1‑148 (MQ=255)                                                                                         gcCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTCg                                                       <  3:186298/149‑1 (MQ=255)                                                                                           ggcgatacgtgaggggaaagtgatcgatgtgtttccgtatcggcgcaaggcccCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTCggg                                                     >  8:161235‑M2/54‑149 (MQ=255)                                                                                           cGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTCggg                                                     <  8:25444/149‑1 (MQ=255)                                                                                              gatacgtgaggggaaagtgatcgatgtgtttccgtatcggcgcaaggcccCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTCGGGGaa                                                  <  7:161235‑M2/99‑1 (MQ=255)                                                                                                   gtgaggggaaagtgatcgatgtgtttccgtatcggcgcaaggcccCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTCGGGGAACAcat                                             >  3:324593‑M2/46‑149 (MQ=255)                                                                                                       acaTCGATTACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGaa                                                               >  5:13753/1‑127 (MQ=255)                                                                                                       acaTCGATTACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGaa                                                               <  6:13753/127‑1 (MQ=255)                                                                                                        caTCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTCGGGGAACACATCATGc                                        <  6:159589/149‑1 (MQ=255)                                                                                                           cGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCAAATCGGCAAACAGAAACGGCGGAAACTCTTCGGGGAACACATCATGCGGc                                     >  5:203405/1‑149 (MQ=255)                                                                                                            gATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACCGCGGAAACTCTTCGGGGAACACATCATGCGGcc                                    >  5:2988/1‑149 (MQ=255)                                                                                                            aagtgatcgatgtgtttccgtatcggcgcaaggcccCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTCGGGGAACACATCATGCGGcc                                    <  4:324593‑M2/113‑1 (MQ=255)                                                                                                               cACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTCg                                                       <  7:313141/127‑1 (MQ=255)                                                                                                               cACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTCg                                                       <  7:317821/127‑1 (MQ=255)                                                                                                               cACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTCg                                                       >  8:313141/1‑127 (MQ=255)                                                                                                               cACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTCg                                                       >  8:317821/1‑127 (MQ=255)                                                                                                                     ccccTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCg                                                                                  <  8:76627/94‑1 (MQ=255)                                                                                                                      cccTAACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGCAACGGCGGAAACACTTCGGGGAACAAATCATGCGGCCCTCTCGAGTa                          >  4:199167/1‑149 (MQ=255)                                                                                                                        cTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTgg                                                                                           <  7:170401/82‑1 (MQ=255)                                                                                                                        cTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTgg                                                                                           >  8:170401/1‑82 (MQ=255)                                                                                                                         tCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAAccgcc                                                                                                >  7:108009/1‑76 (MQ=255)                                                                                                                         tCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAAccgcc                                                                                                <  8:108009/76‑1 (MQ=255)                                                                                                                           aCGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACCGCGGAAACTCTTCGGGGAACACATCATGCGGCCCGATCGAGTACCAc                      <  6:2988/148‑1 (MQ=255)                                                                                                                                           aGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTCGGGGAACACATCATGCGGCCCGATCGAGTACCACGGCTCGCCCGACATTTc     <  6:335414/149‑1 (MQ=255)                                                                                                                                             cccCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTCGGGGAACACATCATGCGGCCCGATCGAGTACCACGGCTCGCCCGACATTTCGt   >  6:80210‑M2/4‑149 (MQ=255)                                                                                                                                              ccCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTCGGGTAACACATCATGCGGCCCGATCGAGTACCACGGCTCGCCCGACATTTCGTc  <  2:155871‑M2/147‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                   ACGGTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGCGGAAACTCTTCGGGGAACACATCATGCGGCCCGATCGAGTACCACGGCTCGCCCGACATTTCGTC  >  NC_002947/5184670‑5184959

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.