New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5184749 =	40 (0.760)	4 (0.080)	4/246	NT	9.7%	coding (1711/1716 nt)	aceK	isocitrate dehydrogenase kinase/phosphatase
	?	NC_002947	5184813 =	36 (0.700)					coding (1647/1716 nt)	aceK	isocitrate dehydrogenase kinase/phosphatase

CAGGCACGCAGCCTGCTGGTGGACCTGGTGCGGCAGAGCACCCCGCAGCAACGGAGGTTCCTGCAGGAACGGTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGC  >  NC_002947/5184602‑5184894                                                                                                                                                    |                                                                                                                                                  gacgaaatgtcgggcgagccgtggtactcgatcgggccgcatgatgtgttacccgaagagtttccgccgtttctgtttgccgatatgggccagcggcggttgttcagccgcttgcatggggaactgtatgacgcggattactggaaggg                                                                                                                                                  <  2:155871‑M1/2‑1 (MQ=255)  acgaaatgtcgggcgagccgtggtactcgatcgggccgcatgatgtgttccccgaagagtttccgccgtttctgtttgccgatatgggccagcggcggttgttcagccgcttgcatggggaactgtatgacgcggattactggaagggg                                                                                                                                                 >  6:80210‑M1/147‑149 (MQ=255)               gctgGTGGACCTGGTGCGGCAGAGCACCCCGCAGCAACGGAGGTTCCTGCAGGAACGGTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATa                                                                                                                                    >  5:363452/1‑149 (MQ=255)                ctgGTGGACCTGGTGCGGCAGAGCACCCCGCAGCAACGGAGGTTCCTGCAGGAACGGTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGAt                                                                                                                                     <  3:226507/147‑1 (MQ=255)                 tggtggACCTGGTGCGGCAGAGCACCCCGCAGCAACGGAGGTTCCTGCAGGAACGGTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATa                                                                                                                                    <  4:261513/147‑1 (MQ=255)                 tggtggACCTGGTGCGGCAGAGCACCCCGCAGCAACGGAGGTTCCTGCAGGAACGGTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATa                                                                                                                                    >  3:261513/1‑147 (MQ=255)                    tggAGCTGGTGCGGGAGAGCACCCCGCAGCATCGGAGGTTCCTGCAGGTACGGTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGCAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGaa                                                                                                                               <  1:317672/149‑1 (MQ=255)                      gACCTGGTGCGGCAGAGCACCCCGCAGCAACGGAGGTTCCTGCAGGAACGGTTGGGCAAGGTGCGTACCCATTTGAGCTAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCTCGCTGATTCACCGGGCCTTGCTCCGATACGGAAac                                                                                                                             <  2:220523/149‑1 (MQ=255)                      gACCTGGTGCGGCAGAGCACCCCGCAGCAACGGAGGTTCCTGCAGGAACGGTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAac                                                                                                                             <  1:329019/149‑1 (MQ=255)                        ccTGGTGCGGCAGAGCACCCCGCAGCAACGGAGGTTCCTGCAGGAACGGTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGcc                                                                                                                                               <  3:74745/129‑1 (MQ=255)                        ccTGGTGCGGCAGAGCACCCCGCAGCAACGGAGGTTCCTGCAGGAACGGTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGcc                                                                                                                                               >  4:74745/1‑129 (MQ=255)                        ccTGGTGCGGCAGAGCACCCCGCAGCAACGGAGGTTCCTGCAGGAACGGTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAaca                                                                                                                            >  1:344661/1‑148 (MQ=255)                          tGGTGCGGCAGAGCACCCCGCAGCAACGGAGGTTCCTGCAGGAACGGTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACAt                                                                                                                         >  7:299772/1‑149 (MQ=255)                          tGGTGCGGCAGAGCACCCCGCAGCAACGGAGGTTCCTGCAGGAACGGTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACAt                                                                                                                         >  6:258535/1‑149 (MQ=255)                            gTGCGGCAGAGCACCCCGCAGCAACGGAGGTTCCTGCAGGAACGGTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATc                                                                                                                        >  7:201716/1‑148 (MQ=255)                             tGCGGCAGAGCACCCCGCAGCAACGGAGGTTCCTGCAGGAACGGTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGa                                                                                                                      <  2:344661/149‑1 (MQ=255)                               cGGCAGAGCACCCCGCAGCAACGGAGGTTCCTGCAGGAACGGTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATc                                                                                                                    <  6:363452/149‑1 (MQ=255)                                   ggccgcatgatgtgttccccgaagagtttccgccgtttctgtttgccgatatgggccagcggcggttgttcagccgcttgcatggggaactgtatgacgcggattactggaagGGGCCTTGCGCCGATACGGAAACACATCGATCACtt                                                                                                                <  4:324593‑M1/36‑1 (MQ=255)                                           ccGCAGCAACGGAGGTTCCTGCAGGAACGGTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACt                                                                                                                 <  4:7571/140‑1 (MQ=255)                                           ccGCAGCAACGGAGGTTCCTGCAGGAACGGTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACt                                                                                                                 >  3:7571/1‑140 (MQ=255)                                            cGCAGCAACGGAGGTTCCTGCAGGAACGGTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGAGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCAc                                                                                                       <  8:45271/149‑1 (MQ=255)                                            atgtgttccccgaagagtttccgccgtttctgtttgccgatatgggccagcggcggttgttcagccgcttgcatggggaactgtatgacgcggattactggaagGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCAc                                                                                                       >  3:324593‑M1/105‑149 (MQ=255)                                                 ttccccgaagagtttccgccgtttctgtttgccgatatgggccagcggcggttgttcagccgcttgcatggggaactgtatgacgcggattactggaagGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATc                                                                                                  <  7:161235‑M1/50‑1 (MQ=255)                                                   aCGGAGGTTCCTGCAGGAACGGTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATcgc                                                                                                >  7:177892/1‑149 (MQ=255)                                                    cccgaagagtttccgccgtttctgtttgccgatatgggccagcggcggttgttcagccgcttgcatggggaactgtatgacgcggattactggaagGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATcgcc                                                                                               >  8:161235‑M1/97‑149 (MQ=255)                                                    cGGAGGTTCCGGCAGGAACGGTTTGGCAAGGTGCTTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACTGAAACACATCGATCACTTTCCCCTCACGTATcgcc                                                                                               <  8:201716/149‑1 (MQ=255)                                                                     aCGGTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCa                                                                              <  5:258535/149‑1 (MQ=255)                                                                        gTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGGTCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTc                                                                                <  5:361716/144‑1 (MQ=255)                                                                        gTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGGTCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTc                                                                                >  6:361716/1‑144 (MQ=255)                                                                        gTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCAc                                                                                                       >  1:214326/1‑121 (MQ=255)                                                                        gTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCAc                                                                                                       <  2:214326/121‑1 (MQ=255)                                                                            ggCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGAACACt                                                                                                                 >  4:163343/1‑107 (MQ=255)                                                                                aGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGt                                                                   <  8:299772/149‑1 (MQ=255)                                                                                   tGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTAACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCa                                                                 >  2:58640/1‑148 (MQ=255)                                                                                             tttGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGcccc                                                                                   <  4:273957/120‑1 (MQ=255)                                                                                             tttGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGcccc                                                                                   >  3:273957/1‑120 (MQ=255)                                                                                                     agaTGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGc                                              <  1:58640/149‑1 (MQ=255)                                                                                                           aGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGa                                        <  8:177892/149‑1 (MQ=255)                                                                                                            gtgtTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGaa                                       >  5:159589/1‑149 (MQ=255)                                                                                                                   aaGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAAccgc                                >  7:25444/1‑149 (MQ=255)                                                                                                                      gCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATcc                                                                       >  2:66341/1‑107 (MQ=255)                                                                                                                      gCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATcc                                                                       <  1:66341/107‑1 (MQ=255)                                                                                                                           aCAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGcc                        >  4:186298/1‑149 (MQ=255)                                                                                                                                        cgcTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCCGGc                         <  5:53612/135‑1 (MQ=255)                                                                                                                                        cgcTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCCGGc                         >  6:53612/1‑135 (MQ=255)                                                                                                                                           tGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCAt                                                    <  5:136699/105‑1 (MQ=255)                                                                                                                                           tGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCAt                                                    >  6:136699/1‑105 (MQ=255)                                                                                                                                             aTTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCAGATCGGCAAACAGaaa      >  1:155871/1‑149 (MQ=255)                                                                                                                                                 aCCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTc                                                                                <  7:308880/71‑1 (MQ=255)                                                                                                                                                 aCCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTc                                                                                >  8:308880/1‑71 (MQ=255)                                                                                                                                                 aCCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAAcggc  >  4:64779/1‑149 (MQ=255)                                                                                                                                                 aCCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCGGAACAACCGCCGCTGGCCCATATCGGCAACCAGAACcggc  >  5:335414/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                  CAGGCACGCAGCCTGCTGGTGGACCTGGTGCGGCAGAGCACCCCGCAGCAACGGAGGTTCCTGCAGGAACGGTTGGGCAAGGTGCGTACCCATTTGAGCGAGATGAAGTGTTTGAAGGCGTGACAGGCCTGTTCGCGCTGATTCACCGGGCCTTGCGCCGATACGGAAACACATCGATCACTTTCCCCTCACGTATCGCCGCCTGCAGCCCCTTCCAGTAATCCGCGTCATACAGTTCCCCATGCAAGCGGCTGAACAACCGCCGCTGGCCCATATCGGCAAACAGAAACGGC  >  NC_002947/5184602‑5184894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.