New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5237782	36 (0.680)	4 (0.080)	4/242	NT	9.7%	coding (242/387 nt)	PP_4614	hypothetical protein
	?	NC_002947	= 5237829	40 (0.800)					coding (289/387 nt)	PP_4614	hypothetical protein

CCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5237675‑5237782 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccaGGCGGATGCTGTCGATCACCCGTTGCAGGCGCACCGGGTCATTGCGTTGGGCCGGGGTGATGAGGCGCTTGGCGACCACGCCGGCGTCGTCGGACAGGGTCAGCATGATGCTGCCGTCGAGGTTGGCAATGCTCAGGTTCACCC  <  NC_002947/5237829‑5237686                                                                                                                                                                                                                                                              CCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAGGCGGATGCTGTCGATCACCCGTTGCAGGCGCACCGGGTCA                                                                                                         >  3:205130/1‑149           CGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAGGCGGATGCTGTCGATCACCCGTTGCAGGCGCACCGGGTCATTGCGTTGGG                                                                                               >  8:2497/1‑149                 AACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAGGCGGATGCTGTCGATCACCCGTTGCAGGCGCACCGGGTCATTGCGTTGGGCCGGG                                                                                          <  7:2497/148‑1                       AGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAGGCGGATGCTGTCGATCACCCGTTGCAGGCGCACCGGGTCATTGCGTTGGGCCGGGGTGAT                                                                                     <  4:205130/147‑1                                                                                                        GCCCAGGCGGATGCTGTCGATCACCCGTTGCAGGCGCACCGGGTCATTGCGTTGGGCCGGGGTGATGAGGCGCTTGGAGACCACGCCGGCGTCGTCGGACAGGGTCAGCATGATGCTGCCGTCGAGGTTGGCAATGCTCAGGTTCACCC  >  8:240919/1‑149                                                                                                                                                                                                                                                              CCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5237675‑5237782 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccaGGCGGATGCTGTCGATCACCCGTTGCAGGCGCACCGGGTCATTGCGTTGGGCCGGGGTGATGAGGCGCTTGGCGACCACGCCGGCGTCGTCGGACAGGGTCAGCATGATGCTGCCGTCGAGGTTGGCAATGCTCAGGTTCACCC  <  NC_002947/5237829‑5237686

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.