New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5237782	36 (0.680)	4 (0.080)	4/242	NT	9.7%	coding (242/387 nt)	PP_4614	hypothetical protein
	?	NC_002947	= 5237829	40 (0.800)					coding (289/387 nt)	PP_4614	hypothetical protein

GAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAGGG  >  NC_002947/5237652‑5237930                                                                                                                                   |                                                                                                                                                     gaacgaaTCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTgc                                                                                                                                     <  4:242036/148‑1 (MQ=255)  aacgaaTCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGc                                                                                                                                                  <  8:291012/134‑1 (MQ=255)  aacgaaTCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGc                                                                                                                                                  >  7:291012/1‑134 (MQ=255)       aTCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGc                                                                                                                               >  5:240436/1‑148 (MQ=255)           gTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACgg                                                                                                                          <  1:322524/149‑1 (MQ=255)           gTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACgg                                                                                                                          <  3:89451/149‑1 (MQ=255)              ctgcATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCACGCGCCTCATCACCCCGGCCCACCGCAATGACCCGGTGCGCCGGCAACGGGTg                                                                                                                       >  4:62596/1‑149 (MQ=255)                gcATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGAt                                                                                                                     >  7:240919/1‑149 (MQ=255)                   ttCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGa                                                                                                                  >  4:275554/1‑149 (MQ=255)                      gCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAg                                                                                                               >  4:165998/1‑149 (MQ=255)                        ccccGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAggcggatgctgtcgatcacccgttgcaggcgcaccgggtca                                                                                                             >  3:205130‑M1/1‑108 (MQ=255)                        ccccGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCa                                                                                                             <  3:165998/149‑1 (MQ=255)                                  cGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAggcggatgctgtcgatcacccgttgcaggcgcaccgggtcattgcgttggg                                                                                                   >  8:2497‑M1/1‑98 (MQ=255)                                   gggTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCTCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCtgggc                                                                                                  >  8:240919‑M2/1‑144 (MQ=255)                                     gTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCt                                                                                                >  6:289618/1‑149 (MQ=255)                                        aaCCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAggcggatgctgtcgatcacccgttgcaggcgcaccgggtcattgcgttgggccggg                                                                                              <  7:2497‑M1/148‑57 (MQ=255)                                        aaCCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGc                                                                                             >  3:104501/1‑149 (MQ=255)                                         aCCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCtt                                                                                               >  4:130959/1‑146 (MQ=255)                                         aCCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCtt                                                                                               <  3:130959/146‑1 (MQ=255)                                          ccTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGa                                                                                           <  6:240436/149‑1 (MQ=255)                                              aGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAggcggatgctgtcgatcacccgttgcaggcgcaccgggtcattgcgttgggccggggtgat                                                                                         <  4:205130‑M1/147‑62 (MQ=255)                                              aGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCg                                                                                        <  4:104501/148‑1 (MQ=255)                                                 aTTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACt                                                                                    >  3:43293/1‑149 (MQ=255)                                                     ccAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACa                                                                                                                >  3:306534/1‑117 (MQ=255)                                                     ccAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACa                                                                                                                <  4:306534/117‑1 (MQ=255)                                                     ccAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGc                                                                                <  3:275554/149‑1 (MQ=255)                                                           tCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAAc                                                                          >  3:299349/1‑149 (MQ=255)                                                               cGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAAccccc                                                                      >  3:76579/1‑149 (MQ=255)                                                                  cagcaTCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGc                                                                   <  4:76579/149‑1 (MQ=255)                                                                  cagcaTCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGc                                                                   <  8:291164/149‑1 (MQ=255)                                                                    gcaTCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCaa                                                                 <  4:43293/149‑1 (MQ=255)                                                                            cTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTgg                                                          <  5:289618/148‑1 (MQ=255)                                                                                 ccTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCt                                                                     <  1:165640/132‑1 (MQ=255)                                                                                 ccTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCt                                                                     >  2:165640/1‑132 (MQ=255)                                                                                        gacgacGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTg                                                                                                                       <  5:138211/75‑1 (MQ=255)                                                                                        gacgacGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTg                                                                                                                       >  6:138211/1‑75 (MQ=255)                                                                                                                     catcaCCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCCTCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTttg                >  4:254390/1‑149 (MQ=255)                                                                                                                     catcaCCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTttg                >  3:93274/1‑149 (MQ=255)                                                                                                                      atcaCCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCtgggccggggtgatgaggcgcttggcgaccacgccggcgtcgtcggacagggtcagcatgatgctgccgtcgaggttggcaatgct                 <  4:205130‑M2/147‑87 (MQ=255)                                                                                                                      atcaCCCCGACCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTttgt               >  2:177972/1‑149 (MQ=255)                                                                                                                       tcaCCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTttgtt              >  1:89924/1‑149 (MQ=255)                                                                                                                         aCCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGACCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTttgttg             <  4:299349/148‑1 (MQ=255)                                                                                                                           cccGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCtgggccggggtgatgaggcgcttggcgaccacgccggcgtcgtcggacagggtcagcatgatgctgccgtcgaggttggcaatgctcaggtt           <  7:2497‑M2/148‑93 (MQ=255)                                                                                                                           cccGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGcc           >  2:32616/1‑148 (MQ=255)                                                                                                                            ccGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCaa         >  4:268000/1‑149 (MQ=255)                                                                                                                               gCCCAggcggatgctgtcgatcacccgttgcaggcgcaccgggtcattgcgttgggccggggtgatgaggcgcttggagaccacgccggcgtcgtcggacagggtcagcatgatgctgccgtcgaggttggcaatgctcaggttcaccc      >  8:240919‑M1/1‑5 (MQ=255)                                                                                                                               gCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGCGCGACAGCATCCGCCTGGGCCGTGCGATCGACCGCAGTCAGAACCCCCTGCAAGTCCTGGCCGCGCTGCCCCGTGAcgccc                                     >  5:235629/1‑118 (MQ=255)                                                                                                                                cccAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCtgggccggggtgatgaggcgcttggcgaccacgccggcgtcgtcggacagggtcagcatgatgctgccgtcgaggttggcaatgctcaggttcacccg     >  8:2497‑M2/1‑51 (MQ=255)                                                                                                                                 ccAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAg    <  3:268000/149‑1 (MQ=255)                                                                                                                                   aaCGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAggg  >  3:304178/1‑149 (MQ=255)                                                                                                                                   aaCGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAggg  >  8:85636/1‑149 (MQ=255)                                                                                                                                   |                                                                                                                                                     GAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAGGG  >  NC_002947/5237652‑5237930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.