New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5237782	36 (0.680)	4 (0.080)	4/242	NT	9.7%	coding (242/387 nt)	PP_4614	hypothetical protein
	?	NC_002947	= 5237829	40 (0.800)					coding (289/387 nt)	PP_4614	hypothetical protein

GGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAGGGCTACTTGCCCTCCTCCACTGCCTTGCCGTTGGCGTCCA  >  NC_002947/5237686‑5237968                                                                                                                                                |                                                                                                                                            gggTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCTCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCtgggc                                                                                                                                        >  8:240919‑M2/1‑144 (MQ=255)   gTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCt                                                                                                                                      >  6:289618/1‑149 (MQ=255)      aaCCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGc                                                                                                                                   >  3:104501/1‑149 (MQ=255)       aCCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCtt                                                                                                                                     >  4:130959/1‑146 (MQ=255)       aCCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCtt                                                                                                                                     <  3:130959/146‑1 (MQ=255)        ccTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGa                                                                                                                                 <  6:240436/149‑1 (MQ=255)            aGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCg                                                                                                                              <  4:104501/148‑1 (MQ=255)               aTTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACt                                                                                                                          >  3:43293/1‑149 (MQ=255)                   ccAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGc                                                                                                                      <  3:275554/149‑1 (MQ=255)                         tCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAAc                                                                                                                >  3:299349/1‑149 (MQ=255)                             cGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAAccccc                                                                                                            >  3:76579/1‑149 (MQ=255)                                cagcaTCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGc                                                                                                         <  8:291164/149‑1 (MQ=255)                                cagcaTCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGc                                                                                                         <  4:76579/149‑1 (MQ=255)                                  gcaTCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCaa                                                                                                       <  4:43293/149‑1 (MQ=255)                                          cTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTgg                                                                                                <  5:289618/148‑1 (MQ=255)                                               ccTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCt                                                                                                           <  1:165640/132‑1 (MQ=255)                                               ccTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCt                                                                                                           >  2:165640/1‑132 (MQ=255)                                                                                   catcaCCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCCTCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTttg                                                      >  4:254390/1‑149 (MQ=255)                                                                                   catcaCCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTttg                                                      >  3:93274/1‑149 (MQ=255)                                                                                    atcaCCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCtgggccggggtgatgaggcgcttggcgaccacgccggcgtcgtcggacagggtcagcatgatgctgccgtcgaggttggcaatgct                                                       <  4:205130‑M2/147‑87 (MQ=255)                                                                                    atcaCCCCGACCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTttgt                                                     >  2:177972/1‑149 (MQ=255)                                                                                     tcaCCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTttgtt                                                    >  1:89924/1‑149 (MQ=255)                                                                                       aCCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGACCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTttgttg                                                   <  4:299349/148‑1 (MQ=255)                                                                                         cccGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCtgggccggggtgatgaggcgcttggcgaccacgccggcgtcgtcggacagggtcagcatgatgctgccgtcgaggttggcaatgctcaggtt                                                 <  7:2497‑M2/148‑93 (MQ=255)                                                                                         cccGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGcc                                                 >  2:32616/1‑148 (MQ=255)                                                                                          ccGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCaa                                               >  4:268000/1‑149 (MQ=255)                                                                                             gCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGCGCGACAGCATCCGCCTGGGCCGTGCGATCGACCGCAGTCAGAACCCCCTGCAAGTCCTGGCCGCGCTGCCCCGTGAcgccc                                                                           >  5:235629/1‑118 (MQ=255)                                                                                              cccAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCtgggccggggtgatgaggcgcttggcgaccacgccggcgtcgtcggacagggtcagcatgatgctgccgtcgaggttggcaatgctcaggttcacccg                                           >  8:2497‑M2/1‑51 (MQ=255)                                                                                               ccAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAg                                          <  3:268000/149‑1 (MQ=255)                                                                                                 aaCGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAggg                                        >  8:85636/1‑149 (MQ=255)                                                                                                 aaCGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAggg                                        >  3:304178/1‑149 (MQ=255)                                                                                                  aCGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAGGGc                                       >  2:273108/1‑149 (MQ=255)                                                                                                   cGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAGGGCt                                      <  4:93274/149‑1 (MQ=255)                                                                                                      aaTGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAGGGCTACt                                   >  8:269212/1‑149 (MQ=255)                                                                                                       aTGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGc                                                  <  4:37284/133‑1 (MQ=255)                                                                                                       aTGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGc                                                  >  3:37284/1‑133 (MQ=255)                                                                                                        tGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCtgggccggggtgatgaggcgcttggcgaccacgccggcgtcgtcggacagggtcagcatgatgctgccgtcgaggttggcaatgctcaggttcacccggtattcgggg                                 >  3:205130‑M2/1‑41 (MQ=255)                                                                                                          aCCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAGGGCTACTTGcc                               <  1:32616/149‑1 (MQ=255)                                                                                                           cccGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAGGGCTACTTGccc                              >  7:66888/1‑149 (MQ=255)                                                                                                                     cTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAGGGCTACTTGCCCTCCTCCACTg                    >  1:208848/1‑149 (MQ=255)                                                                                                                       gCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAGGGCTACTTGCCCTCCTCCACTGcc                  >  6:323/1‑149 (MQ=255)                                                                                                                         aaCGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAGGGCTACTTGCCCTCCTCCACTGCCtt                >  1:229637/1‑149 (MQ=255)                                                                                                                          aCGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAGGGCTACTTGCCCTCCTCCACTGCCTTg               <  2:89924/149‑1 (MQ=255)                                                                                                                                 aTCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAGGGCTACTTGCCCTCCTCCACTGCCTTGCCGTTg         <  2:208848/148‑1 (MQ=255)                                                                                                                                  tCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAGGGCTACTTGCCCTCCTCCAc                      >  5:299480/1‑134 (MQ=255)                                                                                                                                  tCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAGGGCTACTTGCCCTCCTCCAc                      <  6:299480/134‑1 (MQ=255)                                                                                                                                    gACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAGGGCTACTTGCCCTCCTCCACTGCCTTGCCGTTGGCGt     >  6:242200/1‑149 (MQ=255)                                                                                                                                      cAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAGGGCTACTTGCCCTCCTCCACTGCCTTGCCGTTGGCGTcc   <  1:177972/149‑1 (MQ=255)                                                                                                                                       aGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAGGGCTACTTGCCCTCCTCCACTGCCTTGCCGTTGGCGTCCa  <  4:304178/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                            GGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGACAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAGGGCTACTTGCCCTCCTCCACTGCCTTGCCGTTGGCGTCCA  >  NC_002947/5237686‑5237968

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.