| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5443506 = | 69 (1.310) | 4 (0.080) | 4/234 | NT | 6.0% | coding (1274/1989 nt) | PP_4781 | sensor histidine kinase |
| ? | NC_002947 | 5443547 = | 61 (1.250) | coding (1233/1989 nt) | PP_4781 | sensor histidine kinase | |||||
CTTGCTGTCGCTGGCACTGGCCGACCGCATCAACAGCCTGCGCGAGCAGCAGGCACAGACCTTGCGCGACACTGGGCGTACGCTGGAGCAACTGAACCTGCAACTGGCCAGGAGCAATCGCCTGAAGGACGAGTTCCTGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5443649‑5443506‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctggccagTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACATGGTGA > NC_002947/5443547‑5443692 CTTGCTGTCGCTGGCACTGGCCGACCGCATCAACAGCCTGCGCGAGCAGCAGGCACAGACCTTGCGCGACACTGGGCGTACGCTGGAGCAACTGAACCTGCAACTGGCCAGGAGCAATCGCCTGAAGGACGAGTTCCTGGCCA < 5:346071/143‑1CTTGCTGTCGCTGGCACTGGCCGACCGCATCAACAGCCTGCGCGAGCAGCAGGCACAGACCTTGCGCGACACTGGGCGTACGCTGGAGCAACTGAACCTGCAACTGGCCAGGAGCAATCGCCTGAAGGACGAGTTCCTGGCCA > 6:346071/1‑143 CTGTCGCTGGCACTGGCCGACCGCATCAACAGCCTGCGCGAGCAGCAGGCACAGACCTTGCGCGACACTGGGCGTACGCTGGAGCAACTGAACCTGCAACTGGCCAGGAGCAATCGCCTGAAGGACGAGTTCCTGG > 1:190763/1‑136 CTGTCGCTGGCACTGGCCGACCGCATCAACAGCCTGCGCGAGCAGCAGGCACAGACCTTGCGCGACACTGGGCGTACGCTGGAGCAACTGAACCTGCAACTGGCCAGGAGCAATCGCCTGAAGGACGAGTTCCTGG < 2:190763/136‑1 ACAGACCTTGCGCGACACTGGGCGTACGCTGGAGCAACTGAACCTGCAACTGGCCAGGAGCAATCGCCTGAAGGACGAGTT < 5:124036/81‑1 ACAGACCTTGCGCGACACTGGGCGTACGCTGGAGCAACTGAACCTGCAACTGGCCAGGAGCAATCGCCTGAAGGACGAGTT > 6:124036/1‑81 GAACCTGCAACTGGCCAGGAGCAATCGCCTGAAGGACGAGTTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGTAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTT < 3:194197/123‑1 GAACCTGCAACTGGCCAGGAGCAATCGCCTGAAGGACGAGTTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGTAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTT > 4:194197/1‑123 TGGCCAGGAGCAATCGCCTGAAGGACGAGTTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACT > 7:20148/1‑149 GCCAGGAGCAATCGCCTGAAGGACGAGTTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTC > 3:55715/1‑149 TCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCA < 7:124205/75‑1 TCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCA > 8:124205/1‑75 CTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACAT < 2:143313/149‑1 CTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACAT < 6:241348/149‑1 GCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACATGG < 1:272138/148‑1 CAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACATGGTGA > 6:337564/1‑149 CTTGCTGTCGCTGGCACTGGCCGACCGCATCAACAGCCTGCGCGAGCAGCAGGCACAGACCTTGCGCGACACTGGGCGTACGCTGGAGCAACTGAACCTGCAACTGGCCAGGAGCAATCGCCTGAAGGACGAGTTCCTGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5443649‑5443506‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctggccagTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACATGGTGA > NC_002947/5443547‑5443692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |