New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5443506 =	69 (1.310)	4 (0.080)	4/234	NT	6.0%	coding (1274/1989 nt)	PP_4781	sensor histidine kinase
	?	NC_002947	5443547 =	61 (1.250)					coding (1233/1989 nt)	PP_4781	sensor histidine kinase

AGCCGTGTGATGGTACTGAGCCATTTCAGCCCCCATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACATGGTGA  >  NC_002947/5443400‑5443692                                                                                                                                                     |                                                                                                                                                   aGCCGTGTGATGGTACTGAGCCATTTCAGCCCCCATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGtt                                                                                                                                                   >  4:97161/1‑149 (MQ=255)   ccGTGTGATGGTACTGAGCCATTTCAGCCCCCATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTg                                                                                                                                                  >  4:260756/1‑148 (MQ=255)    cGTGTGATGGTACTGAGCCATTTCAGCCCCCATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCTACGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCGTTCAGGCGATTGCTCCTGGGCAGTTg                                                                                                                                                  >  1:109833/1‑147 (MQ=255)          aTGGTACTGAGCCATTTCAGCCCCCATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTc                                                                                                                                           <  5:216097/148‑1 (MQ=255)                cttaGCCATTTCAGCCCCCATCGGCAGGGTGTGCATCAGCTCGAGAGAGACAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGc                                                                                                                                    <  8:217025/145‑1 (MQ=255)                   aGCCATTTCAGCCCCCATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTc                                                                                                                                  >  7:250901/1‑147 (MQ=255)                            aGCCCCCATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGcc                                                                                                                       >  6:222410/1‑149 (MQ=255)                              cccccATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGc                                                                                                                                                 >  5:62423/1‑122 (MQ=255)                              cccccATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGc                                                                                                                                                 <  6:62423/122‑1 (MQ=255)                               ccccATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAg                                                                                                                    <  6:114337/149‑1 (MQ=255)                                 ccATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAgtg                                                                                                                  >  7:254878/1‑149 (MQ=255)                                  cATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGtt                                                                                                                                      <  5:80427/128‑1 (MQ=255)                                  cATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGtt                                                                                                                                      >  6:80427/1‑128 (MQ=255)                                   aacagcctgcgcgagcagcaggcacagaccttacgcgacactgggcgtacgctggagcaactgaacctgcaaCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTc                                                                                                                                           >  4:194197‑M1/73‑123 (MQ=255)                                   aacagcctgcgcgagcagcaggcacagaccttacgcgacactgggcgtacgctggagcaactgaacctgcaaCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTc                                                                                                                                           <  3:194197‑M1/51‑1 (MQ=255)                                    tCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTcg                                                                                                               <  8:250901/149‑1 (MQ=255)                                         aGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCaa                                                                                                          <  3:260756/149‑1 (MQ=255)                                          gggTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAg                                                                                                         <  3:97161/149‑1 (MQ=255)                                               tgCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCtg                                                                                                    <  1:150632/149‑1 (MQ=255)                                                gCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGt                                                                                                       >  3:185489/1‑145 (MQ=255)                                                gCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGt                                                                                                       <  4:185489/145‑1 (MQ=255)                                                 cATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCtgtg                                                                                                  >  5:125342/1‑149 (MQ=255)                                                  aTCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGc                                                                                                 >  8:23620/1‑149 (MQ=255)                                                   tCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGcc                                                                                                <  6:125342/149‑1 (MQ=255)                                                      gCTCGAGCGAGCCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCctgc                                                                                             <  5:222410/149‑1 (MQ=255)                                                         cgagcgagCCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCtgctgc                                                                                          >  7:14913/1‑149 (MQ=255)                                                          gagcgagcCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTgctgct                                                                                         >  8:106803/1‑149 (MQ=255)                                                                 ccAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGt                                                                                                       <  4:141629/128‑1 (MQ=255)                                                                 ccAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGt                                                                                                       >  3:141629/1‑128 (MQ=255)                                                                  cAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAgg                                                                                 <  5:126755/149‑1 (MQ=255)                                                                   aaTCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAg                                                                                                         >  4:111963/1‑124 (MQ=255)                                                                   aaTCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAg                                                                                                         <  3:111963/124‑1 (MQ=255)                                                                   aaTCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGc                                                                                >  1:196509/1‑149 (MQ=255)                                                                   aaTCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGc                                                                                <  2:196509/149‑1 (MQ=255)                                                                    aTCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCACGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCt                                                                               <  4:203439/149‑1 (MQ=255)                                                                       aCTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTcgc                                                                                                              <  2:175263/115‑1 (MQ=255)                                                                       aCTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTcgc                                                                                                              >  1:175263/1‑115 (MQ=255)                                                                        cTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGtt                                                                            >  7:130276/1‑148 (MQ=255)                                                                        cTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTg                                                                           <  8:14913/149‑1 (MQ=255)                                                                         tCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGAGACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCa                                                                                   >  1:73375/1‑141 (MQ=255)                                                                         tCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCctgctg                                                                                           >  8:138843/1‑132 (MQ=255)                                                                         tCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCctgctg                                                                                           <  7:138843/132‑1 (MQ=255)                                                                         tCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCa                                                                                   <  2:73375/140‑1 (MQ=255)                                                                         tCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGa                                                                          >  1:143313/1‑149 (MQ=255)                                                                                aTCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCATCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCa                                                                                                                                >  2:187887/1‑88 (MQ=255)                                                                                   cgatctcGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAATGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATtcggtcgg                                                                 <  3:316130/142‑1 (MQ=255)                                                                                    gggTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGtt                                                                            >  4:213451/1‑136 (MQ=255)                                                                                    gggTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGtt                                                                            <  3:213451/136‑1 (MQ=255)                                                                                       tACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGt                                                            >  1:54780/1‑149 (MQ=255)                                                                                          gCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTAAGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCTCGCAGGCTGTTGATGCGGTCgg                                                                 >  4:316130/1‑141 (MQ=255)                                                                                                 aTGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGa                                                    >  1:107148/1‑147 (MQ=255)                                                                                                 aTGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGa                                                    >  5:241348/1‑147 (MQ=255)                                                                                                 aTGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACa                                                  <  7:106803/149‑1 (MQ=255)                                                                                                  gaacctgcaactggccaggagcaatcgcctgaaggacgagttcctggccagTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGTAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGtt                                                                            <  3:194197‑M2/72‑1 (MQ=255)                                                                                                  gaacctgcaactggccaggagcaatcgcctgaaggacgagttcctggccagTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGTAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGtt                                                                            >  4:194197‑M2/52‑123 (MQ=255)                                                                                                     gTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACa                                                  >  3:275386/1‑145 (MQ=255)                                                                                                     gTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACa                                                  <  4:275386/145‑1 (MQ=255)                                                                                                      tCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAg                                             <  8:130276/149‑1 (MQ=255)                                                                                                      tCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAg                                             <  7:23620/149‑1 (MQ=255)                                                                                                        aCGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAgg                                            <  2:233210/148‑1 (MQ=255)                                                                                                        aCGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAgg                                            >  1:233210/1‑148 (MQ=255)                                                                                                        aCGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGc                                           <  2:107148/149‑1 (MQ=255)                                                                                                            TGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAg                                             >  6:346071‑M1/1‑143 (MQ=255)                                                                                                            TGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAg                                             <  5:346071‑M1/143‑1 (MQ=255)                                                                                                             tggccaggagcaatcgcctgaaggacgagttcctggccagTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACt                                       >  7:20148‑M2/41‑149 (MQ=255)                                                                                                               gccaggagcaatcgcctgaaggacgagttcctggccagTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTc                                     >  3:55715‑M2/39‑149 (MQ=255)                                                                                                               CCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAg                                                 >  1:190763‑M1/1‑136 (MQ=255)                                                                                                               CCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAg                                                 <  2:190763‑M1/136‑1 (MQ=255)                                                                                                                    A‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCtgt                                                                                                   >  6:124036‑M1/1‑81 (MQ=255)                                                                                                                    A‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCtgt                                                                                                   <  5:124036‑M1/81‑1 (MQ=255)                                                                                                                       cTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGcc                              >  2:272138/1‑148 (MQ=255)                                                                                                                          gTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAAc                          >  4:242301/1‑149 (MQ=255)                                                                                                                           tCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCGAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGc                                           >  1:233465/1‑132 (MQ=255)                                                                                                                           tCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGc                                           <  2:233465/131‑1 (MQ=255)                                                                                                                           tCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGcc                              <  4:8375/144‑1 (MQ=255)                                                                                                                           tCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGcc                              >  3:8375/1‑144 (MQ=255)                                                                                                                              ttCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCaa                                              <  2:235845/125‑1 (MQ=255)                                                                                                                              ttCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCaa                                              >  1:235845/1‑125 (MQ=255)                                                                                                                                      aTTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGctggctgg              >  5:144192/1‑149 (MQ=255)                                                                                                                                          cTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAgctggct                >  7:2560/1‑143 (MQ=255)                                                                                                                                          cTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAgctggct                <  8:2560/143‑1 (MQ=255)                                                                                                                                           tcctggccagTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCa                                                                                   <  7:124205‑M2/65‑1 (MQ=255)                                                                                                                                           tcctggccagTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCa                                                                                   >  8:124205‑M2/11‑75 (MQ=255)                                                                                                                                             ctggccagTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACAt       <  6:241348‑M2/141‑1 (MQ=255)                                                                                                                                             ctggccagTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACAt       <  2:143313‑M2/141‑1 (MQ=255)                                                                                                                                             cgggCCAGTTGCAGGTTC‑AGTTGCTCCAGCNTACGCCCAGTGTCGCGCAAGGTCGGTGACTGCTGCTAGCGCAGGCTGTTGCTTCGGTCGGCCAGTGCCAGCGACAGCAAGTCCACTTCCAAGGCCGCACCCAGCTGGCTGGCATACag       >  1:27847/3‑148 (MQ=255)                                                                                                                                                gccagTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACATgg     <  1:272138‑M2/143‑1 (MQ=255)                                                                                                                                                  cagTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACATGGtga  >  6:337564‑M2/4‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   AGCCGTGTGATGGTACTGAGCCATTTCAGCCCCCATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGGTACGCAGCTCATGAGTCACGCTGGCCAGGA‑ACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTC‑AGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACATGGTGA  >  NC_002947/5443400‑5443692

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.