New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5444212 =	38 (0.720)	3 (0.060)	3/248	NT	7.2%	coding (568/1989 nt)	PP_4781	sensor histidine kinase
	?	NC_002947	5444250 =	40 (0.780)					coding (530/1989 nt)	PP_4781	sensor histidine kinase

TTGTTCGAACTGCAACTGCCACCTGGCAAGGTGACCACCGCGTACCTGCGGCTGCACAGCCAGGGTTCGGTGCAAGCGCCGCTGGCGTTATGGTCCCCTGAAGCCTACCTGGAAGAGCAGCCCACGCGCCTGTATGTGCTGGGGATGATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5444362‑5444212 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTCGAACAAGTAGTTGTTCTGCCGGATCTGCCGGCTGTCGTAGG  >  NC_002947/5444250‑5444397                                                                                                                                                                                                                                                                                                             TTGTTCGAACTGCAACTGCCACCTGGCAAGGTGACCACCGCGTACCTGCGGCTGCACAGCCAGGGTTCGGTGCAAGCGCCGCTGGCGTTATGGTCCCCTGAAGCCTACCTGGAAGAGCAGCCCACGCGCCTGTATGTGCTGGGGATGAT                                                                                                                                                        >  5:85423/1‑149   GTTCGAACTGCAACTGCCACCTGGCAAGGTGACCACCGCGTACCTGCGGCTGCACAGCCAGGGTTCGGTGCAAGCGCCGCTGGCGTTATGGTCCCCTGAAGCCTACCTGGAAGAGCAGCCCACGCGCCTGTATGTGCTGGGGATGATC                                                                                                                                                       >  2:116117/1‑148                                                                                                              TGGAAGAGCAGCCCACGCGCCTGTATGTGCTGGGGATGATCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTC                                           >  7:320503/1‑149                                                                                                               GGAAGAGCAGCCCACGCGCCTGTATGTGCTGGGGATGATCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAG                                                    <  5:30393/139‑1                                                                                                               GGAAGAGCAGCCCACGCGCCTGTATGTGCTGGGGATGATCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAG                                                    >  6:30393/1‑139                                                                                                                                                       TTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTCGAACAAGTAGTTGTTCTGCCGGATCTGCCGGCTGTCGTAGG  >  4:181915/1‑149                                                                                                                                                       TTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTCGAACAAGTAGTTGTTCTGCCGGATCTGCCGGCTGTCGTAGG  <  4:208232/149‑1                                                                                                                                                                                                                                                                                                             TTGTTCGAACTGCAACTGCCACCTGGCAAGGTGACCACCGCGTACCTGCGGCTGCACAGCCAGGGTTCGGTGCAAGCGCCGCTGGCGTTATGGTCCCCTGAAGCCTACCTGGAAGAGCAGCCCACGCGCCTGTATGTGCTGGGGATGATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5444362‑5444212 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTCGAACAAGTAGTTGTTCTGCCGGATCTGCCGGCTGTCGTAGG  >  NC_002947/5444250‑5444397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.