New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5444212 =	38 (0.720)	3 (0.060)	3/248	NT	7.2%	coding (568/1989 nt)	PP_4781	sensor histidine kinase
	?	NC_002947	5444250 =	40 (0.780)					coding (530/1989 nt)	PP_4781	sensor histidine kinase

GGCCAGAAATAGGCTACACCGGCGCCGTTCACCGAGACCTGGTAAAGGCCGAACGACGCGATGTAAAGGATGTAATAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTC  >  NC_002947/5444064‑5444356                                                                                                                                                     |                                                                                                                                                 cctacgacagccggcagatccggcagaacaactacttgttcgaactgcaactgccacctggcaaggtgaccaccgcgtacctgcggctgcacagccagggttcggtgcaagcgccgctggcgttatggtcccctgaagcctacctggaa                                                                                                                                                  >  4:181915‑M1/149‑149 (MQ=255) cctacgacagccggcagatccggcagaacaactacttgttcgaactgcaactgccacctggcaaggtgaccaccgcgtacctgcggctgcacagccagggttcggtgcaagcgccgctggcgttatggtcccctgaagcctacctggaa                                                                                                                                                  <  4:208232‑M1/1‑1 (MQ=255)  gCCAGAAATAGGCTACACCGGCGCCGTTCACCGAGACCTGGTAAAGGCCGAACGACGCGATGTAAAGGATGTAATAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTa                                                                                                                                                  <  7:260882/148‑1 (MQ=255)  gCCAGAAATAGGCTACACCGGCGCCGTTCACCGAGACCTGGTAAAGGCCGAACGACGCGATGTAAAGGATGTAATAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTa                                                                                                                                                  <  4:280051/148‑1 (MQ=255)                    cGGCGCCGTTCACCGAGACCTGGTAAAGGCCGAACGACGCGATGTAAAGGATGTAATAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACAt                                                                                                                                 <  3:57479/147‑1 (MQ=255)                    cGGCGCCGTTCACCGAGACCTGGTAAAGGCCGAACGACGCGATGTAAAGGATGTAATAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACAt                                                                                                                                 >  4:57479/1‑147 (MQ=255)                     ggCGCCGTTCACCGAGACCTGGTAAAGGCCGAACGACGCGATGTAAAGGATGTAATAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATa                                                                                                                                >  2:327791/1‑147 (MQ=255)                           gTTCACCGAGACCTGGTAAAGGCCGAACGACGCGATGTAAAGGATGTAATAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGcgcg                                                                                                                        >  4:3432/1‑149 (MQ=255)                              cACCGAGACCTGGTAAAGGCCGAACGACGCGATGTAAAGGATGTAATAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTg                                                                                                                      <  3:3432/148‑1 (MQ=255)                                          gaactgcaactgccacctggcaaggtgaccaccgcgtacctgcggctgcacagccagggttcggtgcaagcgccgctggcgttatggtcccctgaagcctacctggaAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCa                                                                                                         >  7:320503‑M1/108‑149 (MQ=255)                                          gTAAAGGCCGAACGACGCGATGTAAAGGATGTAATAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTc                                                                                                           <  5:109291/147‑1 (MQ=255)                                          gTAAAGGCCGAACGACGCGATGTAAAGGATGTAATAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCa                                                                                                         <  4:319154/149‑1 (MQ=255)                                                gCCGAACGACGCGATGTAAAGGATGTAATAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAgg                                                                                                   <  1:327791/149‑1 (MQ=255)                                                   gAACGACGCGATGTAAAGGATGTAATAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCtt                                                                                                >  1:136850/1‑149 (MQ=255)                                                   ctgccacctggcaaggtgaccaccgcgtacctgcggctgcacagccagggttcggtgcaagcgccgctggcgttatggtcccctgaagcctacctggaAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTcc                                                                                                          <  5:30393‑M1/41‑1 (MQ=255)                                                   ctgccacctggcaaggtgaccaccgcgtacctgcggctgcacagccagggttcggtgcaagcgccgctggcgttatggtcccctgaagcctacctggaAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTcc                                                                                                          >  6:30393‑M1/99‑139 (MQ=255)                                                                 aaaGGATGTAATAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAgg                                                                                                                            <  5:276902/107‑1 (MQ=255)                                                                 aaaGGATGTAATAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGATGCTCTACCAGGTAGGCTTCAGGGGCCCATAAc                                                                                  >  3:206988/1‑149 (MQ=255)                                                                       tGTAATAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAgc                                                                            >  7:296267/1‑149 (MQ=255)                                                                           aTAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAgcggc                                                                         <  8:296267/148‑1 (MQ=255)                                                                                ggTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAg                                                                                                        <  1:263740/112‑1 (MQ=255)                                                                                ggTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAg                                                                                                        >  2:263740/1‑112 (MQ=255)                                                                                  tAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCAc                                                                 <  5:99255/149‑1 (MQ=255)                                                                                      tGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTcc                                                                                                          <  2:44801/104‑1 (MQ=255)                                                                                      tGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTcc                                                                                                          >  1:44801/1‑104 (MQ=255)                                                                                       gACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAAc                                                            >  6:113285/1‑149 (MQ=255)                                                                                       gACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAAc                                                            >  1:141792/1‑149 (MQ=255)                                                                                          gTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGGACCCt                                                         <  7:147949/149‑1 (MQ=255)                                                                                             acgcacgcTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGc                                                      >  1:287925/1‑149 (MQ=255)                                                                                               gcacgcTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACTATAACGCCAGCGGCGCTTGCACCGAACCCTGGCtg                                                    >  7:259914/1‑149 (MQ=255)                                                                                                        ggTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCg                                            >  3:317767/1‑148 (MQ=255)                                                                                                         gTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCg                                            >  6:117367/1‑147 (MQ=255)                                                                                                         gTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCg                                            >  6:85423/1‑147 (MQ=255)                                                                                                            gATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCtt                                                                     <  5:35505/119‑1 (MQ=255)                                                                                                            gATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCtt                                                                     >  6:35505/1‑119 (MQ=255)                                                                                                            gATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAgg                                        >  2:43835/1‑148 (MQ=255)                                                                                                               gAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTgg                                                       <  1:158619/130‑1 (MQ=255)                                                                                                               gAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTgg                                                       >  2:158619/1‑130 (MQ=255)                                                                                                                          acacCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGt                                       <  3:30360/135‑1 (MQ=255)                                                                                                                          acacCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGt                                       >  4:30360/1‑135 (MQ=255)                                                                                                                             ccAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTg                      >  3:208232/1‑149 (MQ=255)                                                                                                                                     aCCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACTATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTgg              <  8:259914/149‑1 (MQ=255)                                                                                                                                     aCCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTg               <  2:287925/148‑1 (MQ=255)                                                                                                                                            aaaCGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGgcagttg        <  2:141792/148‑1 (MQ=255)                                                                                                                                            aaaCGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGgcagttg        >  2:226131/1‑148 (MQ=255)                                                                                                                                                 ccGTAGATCATCCCCAGCACGTACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTc  >  8:245667/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                 GGCCAGAAATAGGCTACACCGGCGCCGTTCACCGAGACCTGGTAAAGGCCGAACGACGCGATGTAAAGGATGTAATAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTC  >  NC_002947/5444064‑5444356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.