New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5444212 =	38 (0.720)	3 (0.060)	3/248	NT	7.2%	coding (568/1989 nt)	PP_4781	sensor histidine kinase
	?	NC_002947	5444250 =	40 (0.780)					coding (530/1989 nt)	PP_4781	sensor histidine kinase

GTAAAGGCCGAACGACGCGATGTAAAGGATGTAATAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTCGAACAAGTAGTTGTTCTGCCGGATCTGCCGGCTGTCGTAGG  >  NC_002947/5444105‑5444397                                                                                                                                                  |                                                                                                                                                    gaactgcaactgccacctggcaaggtgaccaccgcgtacctgcggctgcacagccagggttcggtgcaagcgccgctggcgttatggtcccctgaagcctacctggaAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCa                                                                                                                                                  >  7:320503‑M1/108‑149 (MQ=255) gTAAAGGCCGAACGACGCGATGTAAAGGATGTAATAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTc                                                                                                                                                    <  5:109291/147‑1 (MQ=255) gTAAAGGCCGAACGACGCGATGTAAAGGATGTAATAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCa                                                                                                                                                  <  4:319154/149‑1 (MQ=255)       gCCGAACGACGCGATGTAAAGGATGTAATAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAgg                                                                                                                                            <  1:327791/149‑1 (MQ=255)          gAACGACGCGATGTAAAGGATGTAATAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCtt                                                                                                                                         >  1:136850/1‑149 (MQ=255)          ctgccacctggcaaggtgaccaccgcgtacctgcggctgcacagccagggttcggtgcaagcgccgctggcgttatggtcccctgaagcctacctggaAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTcc                                                                                                                                                   >  6:30393‑M1/99‑139 (MQ=255)          ctgccacctggcaaggtgaccaccgcgtacctgcggctgcacagccagggttcggtgcaagcgccgctggcgttatggtcccctgaagcctacctggaAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTcc                                                                                                                                                   <  5:30393‑M1/41‑1 (MQ=255)                        aaaGGATGTAATAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGATGCTCTACCAGGTAGGCTTCAGGGGCCCATAAc                                                                                                                           >  3:206988/1‑149 (MQ=255)                              tGTAATAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAgc                                                                                                                     >  7:296267/1‑149 (MQ=255)                                  aTAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAgcggc                                                                                                                  <  8:296267/148‑1 (MQ=255)                                       ggTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAg                                                                                                                                                 >  2:263740/1‑112 (MQ=255)                                       ggTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAg                                                                                                                                                 <  1:263740/112‑1 (MQ=255)                                         tAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCAc                                                                                                          <  5:99255/149‑1 (MQ=255)                                             tGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTcc                                                                                                                                                   >  1:44801/1‑104 (MQ=255)                                             tGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTcc                                                                                                                                                   <  2:44801/104‑1 (MQ=255)                                              gACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAAc                                                                                                     >  1:141792/1‑149 (MQ=255)                                              gACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAAc                                                                                                     >  6:113285/1‑149 (MQ=255)                                                 gTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGGACCCt                                                                                                  <  7:147949/149‑1 (MQ=255)                                                    acgcacgcTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGc                                                                                               >  1:287925/1‑149 (MQ=255)                                                      gcacgcTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACTATAACGCCAGCGGCGCTTGCACCGAACCCTGGCtg                                                                                             >  7:259914/1‑149 (MQ=255)                                                               ggTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCg                                                                                     >  3:317767/1‑148 (MQ=255)                                                                gTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCg                                                                                     >  6:85423/1‑147 (MQ=255)                                                                gTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCg                                                                                     >  6:117367/1‑147 (MQ=255)                                                                   gATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCtt                                                                                                              >  6:35505/1‑119 (MQ=255)                                                                   gATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCtt                                                                                                              <  5:35505/119‑1 (MQ=255)                                                                   gATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAgg                                                                                 >  2:43835/1‑148 (MQ=255)                                                                      gAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTgg                                                                                                <  1:158619/130‑1 (MQ=255)                                                                      gAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTgg                                                                                                >  2:158619/1‑130 (MQ=255)                                                                                 acacCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGt                                                                                >  4:30360/1‑135 (MQ=255)                                                                                 acacCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGt                                                                                <  3:30360/135‑1 (MQ=255)                                                                                    ccAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTg                                                               >  3:208232/1‑149 (MQ=255)                                                                                            aCCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACTATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTgg                                                       <  8:259914/149‑1 (MQ=255)                                                                                            aCCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTg                                                        <  2:287925/148‑1 (MQ=255)                                                                                                   aaaCGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGgcagttg                                                 <  2:141792/148‑1 (MQ=255)                                                                                                   aaaCGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGgcagttg                                                 >  2:226131/1‑148 (MQ=255)                                                                                                        tggaagagcagcccacgcgcctgtatgtgctggggatgatctTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTc                                           >  7:320503‑M2/43‑149 (MQ=255)                                                                                                        ccGTAGATCATCCCCAGCACGTACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTc                                           >  8:245667/1‑149 (MQ=255)                                                                                                         ggaagagcagcccacgcgcctgtatgtgctggggatgatctTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGgcag                                                    <  5:30393‑M2/98‑1 (MQ=255)                                                                                                         ggaagagcagcccacgcgcctgtatgtgctggggatgatctTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGgcag                                                    >  6:30393‑M2/42‑139 (MQ=255)                                                                                                             GATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTCGAAc                                       >  2:116117‑M1/1‑148 (MQ=255)                                                                                                              ATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTCGAACaa                                     >  5:85423‑M1/1‑149 (MQ=255)                                                                                                                 atcCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTCGAACAagta                                  <  1:43835/149‑1 (MQ=255)                                                                                                                  tcCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTCGAACAagtag                                 <  4:317767/149‑1 (MQ=255)                                                                                                                    cccAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTCGAACAAGTAgtt                               >  1:137279/1‑149 (MQ=255)                                                                                                                     ccAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTc                                           <  4:250891/136‑1 (MQ=255)                                                                                                                     ccAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTc                                           >  5:313715/1‑136 (MQ=255)                                                                                                                     ccAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTc                                           <  6:313715/136‑1 (MQ=255)                                                                                                                     ccAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTc                                           >  3:250891/1‑136 (MQ=255)                                                                                                                           cgtACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTCGAACAAGTAGTTGTTCTGc                        <  7:245667/147‑1 (MQ=255)                                                                                                                              aCAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTCGAACAAGTAGTTGTTCTGcc                       <  4:93251/147‑1 (MQ=255)                                                                                                                              aCAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTCGAACAAGTAGTTGTTCTGcc                       >  3:93251/1‑147 (MQ=255)                                                                                                                               cAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTCGAACAAGTAGTTGTTCTGCCGGa                    <  5:113285/149‑1 (MQ=255)                                                                                                                                  gcgcGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTc                                           >  6:130118/1‑123 (MQ=255)                                                                                                                                  gcgcGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTc                                           <  5:130118/123‑1 (MQ=255)                                                                                                                                              ctctTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTCGAACAAGTAGTTGTTCTGCCGGATCTGCCGGCTGTCg      >  6:219396/1‑148 (MQ=255)                                                                                                                                                 tTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTCGAACAAGTAGTTGTTCTGCCGGATCTGCCGGCTGTCGTAgg  >  4:181915‑M2/2‑149 (MQ=255)                                                                                                                                                 tTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTCGAACAAGTAGTTGTTCTGCCGGATCTGCCGGCTGTCGTAgg  <  4:208232‑M2/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GTAAAGGCCGAACGACGCGATGTAAAGGATGTAATAGAGGTAGCTGACGTCACGCACGCTGAGGTAGATGAACAGGTTGTACACCAGCATCACCAGTAAAACGCCGTAGATCATCCCCAGCACATACAGGCGCGTGGGCTGCTCTTCCAGGTAGGCTTCAGGGGACCATAACGCCAGCGGCGCTTGCACCGAACCCTGGCTGTGCAGCCGCAGGTACGCGGTGGTCACCTTGCCAGGTGGCAGTTGCAGTTCGAACAAGTAGTTGTTCTGCCGGATCTGCCGGCTGTCGTAGG  >  NC_002947/5444105‑5444397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.