New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5456898	42 (0.800)	4 (0.080)	4/246	NT	9.6%	coding (630/2607 nt)	leuS	leucine‑‑tRNA ligase
	?	NC_002947	= 5456990	35 (0.680)					coding (722/2607 nt)	leuS	leucine‑‑tRNA ligase

CGGCGGACCAGACCGTACTGGCCAACGAACAAGTCATCGACGGCCGTGGCTGGCGTTCGGGCGCGCTGATCGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5456747‑5456898 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgATGCTGGCCTTGTCGTACGGGAACTGGACTTCCATGCCGCGCGATTTGCCGATCCAGTTGCGCTGCATGGTCTTGACCTGCTCAGGCCAGCCCGGCAGC  <  NC_002947/5456990‑5456892                                                                                                                                                                                                                                                             CGGCGGACCAGACCGTACTGGCCAACGAACAAGTCATCGACGGCCGTGGCTGGCGTTCGGGCGCGCTGATCGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTG                                                                                                        >  3:168968/1‑149                                    ATCGACGGCCGTGGCTGGCGTTCGGGCGCGCTGATCGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGATGCTGGCCTTGTCGTACGGGAACTGGACTTC                                                                     >  3:68088/1‑149                                                                       CGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGATGCTGGCCTTGTCGTACGGGAACTGGACTTCCATGCCGCGCGATTTGCCGATCCAGTTGCGCTGCA                                  >  8:128525/1‑149                                                                                                     CCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGATGCTGGCCTTGTCGTACGGGAACTGGACTTCCATGCCGCGCGATTTGCCGATCCAGTTGCGCTGCATGGTCTTGACCTGCTCAGGCCAGCCCGG      <  4:68088/147‑1                                                                                                       GCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGATGCTGGCCTTGTCGTACGGGAACTGGACTTCCATGCCGCGCGATTTGCCGATCCAGTTGCGCTGCATGGTCTTGACCTGCTCAGGCCAGCCCGGCAGC  <  7:128525/149‑1                                                                                                                                                                                                                                                             CGGCGGACCAGACCGTACTGGCCAACGAACAAGTCATCGACGGCCGTGGCTGGCGTTCGGGCGCGCTGATCGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5456747‑5456898 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgATGCTGGCCTTGTCGTACGGGAACTGGACTTCCATGCCGCGCGATTTGCCGATCCAGTTGCGCTGCATGGTCTTGACCTGCTCAGGCCAGCCCGGCAGC  <  NC_002947/5456990‑5456892

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.