New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5456898	42 (0.800)	4 (0.080)	4/246	NT	9.6%	coding (630/2607 nt)	leuS	leucine‑‑tRNA ligase
	?	NC_002947	= 5456990	35 (0.680)					coding (722/2607 nt)	leuS	leucine‑‑tRNA ligase

GACCAGACCGTACTGGCCAACGAACAAGTCATCGACGGCCGTGGCTGGCGTTCGGGCGCGCTGATCGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAGGCCAGCATCGGCCACGAAGGCACCCTCAAGGTCTTCACCACCCGTCCGGACACGCTGATGGGC  >  NC_002947/5456752‑5457045                                                                                                                                                   |                                                                                                                                                    gACCAGACCGTACTGGCCAACGAACAAGTCATCGACGGCCGTGGCTGGCGTTCGGGCGCGCTGATCGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCggg                                                                                                                                                   >  3:158277/1‑149 (MQ=255)  aCCAGACCGTACTGGCCAACGAACAAGTCATCGACGGTCGTGGCTGGCGTTCGGGCGCGCTGATCGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGc                                                                                                                                                  >  5:198818/1‑149 (MQ=255)    cAGACCGTACTGGCCAACGAACAAGTCATCGACGGCCGTGGCTGGCGTTCGGGCGCGCTGATCGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTg                                                                                                                                                >  5:233463/1‑149 (MQ=255)      gACCGTACTGGCCAACGAACAAGTCATCGACGGCCGTGGCTGGCGTTCGGGCGCGCTGATCGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGc                                                                                                                                              >  4:332228/1‑149 (MQ=255)          gTACTGGCCAACGAACAAGTCATCGACGGTCGTGGCTGGCGTTCGGGCGCGCTGATCGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGa                                                                                                                                          <  6:198818/149‑1 (MQ=255)             cTGGCCAACGAACAAGTCATCGACGGCCGTGGCTGGCGTTCGGGCGCGCTGATCGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGc                                                                                                                                        <  3:332228/148‑1 (MQ=255)                gCCAACGAACAAGTCATCGACGGCCGTGGCTGGCGTTCGGGCGCGCTGATCGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAg                                                                                                                                      <  4:158277/147‑1 (MQ=255)                   aaCGAACAAGTCATCGACGGCCGTGGCTGGCGTTCGGGCGCGCTGATCGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCaa                                                                                                                                 >  7:324762/1‑149 (MQ=255)                    aCGAACAAGTCATCGACGGCCGTGGCTGGCGTTCGGGCGCGCTGATCGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAg                                                                                                                                         <  6:210928/140‑1 (MQ=255)                    aCGAACAAGTCATCGACGGCCGTGGCTGGCGTTCGGGCGCGCTGATCGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAg                                                                                                                                         >  5:210928/1‑140 (MQ=255)                      gAACAAGTCATCGACGGCCGTGGCTGGCGTTCGGGCGCGCTGATCGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGAc                                                                                                                              >  3:214227/1‑149 (MQ=255)                               aTCGACGGCCGTGGCTGGCGTTCGGGCGCGCTGATCGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGatgctggccttgtcgtacgggaactggacttc                                                                                                                     >  3:68088‑M1/1‑117 (MQ=255)                               aTCGACGGCCGTGGCTGGCGTTCGGGCGCGCTGATCGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAgcg                                                                                                                     >  5:184007/1‑149 (MQ=255)                                    cGGCCGTGGCTGGCGTTCGGGCGCGCTGATCGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACt                                                                                                                <  6:233463/149‑1 (MQ=255)                                          tggctggcGTTCGGGCGCGCTGATCGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCg                                                                                                          <  8:324762/149‑1 (MQ=255)                                                           cgcTGATCGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATg                                                                                         <  4:214227/149‑1 (MQ=255)                                                              tGATCGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTGCGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATgg                                                                                        >  1:82397/1‑147 (MQ=255)                                                               gATCGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAg                                                                                     >  3:150888/1‑149 (MQ=255)                                                                  cGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGatgctggccttgtcgtacgggaactggacttccatgccgcgcgatttgccgatccagttgcgctgca                                                                                  >  8:128525‑M1/1‑82 (MQ=255)                                                                   gagaAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCa                                                                                 <  4:168968/149‑1 (MQ=255)                                                                           cgAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCg                                                                          >  7:201571/1‑148 (MQ=255)                                                                            gAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCaa                                                                                                                                 >  5:206012/1‑92 (MQ=255)                                                                            gAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCaa                                                                                                                                 <  6:206012/92‑1 (MQ=255)                                                                            gAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTa                                                                        >  6:339866/1‑149 (MQ=255)                                                                                    gATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAgg                                                                >  5:299250/1‑149 (MQ=255)                                                                                    gATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAgg                                                                >  2:208261/1‑149 (MQ=255)                                                                                    gATGTACTACTTCCGCATCACCGATTACGCCGACGAACTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGc                                                                                                        <  8:68403/109‑1 (MQ=255)                                                                                          ctactTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAGGCCAGc                                                           <  1:208261/148‑1 (MQ=255)                                                                                                ccGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGatgctggccttgtcgtacgggaactggacttccatgccgcgcgatttgccgatccagttgcgctgcatggtcttgacctgctcaggccagcccgg                                                      <  4:68088‑M1/147‑96 (MQ=255)                                                                                                ccGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGc                                                                                            <  8:110305/109‑1 (MQ=255)                                                                                                ccGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGc                                                                                            >  7:110305/1‑109 (MQ=255)                                                                                                  gCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGatgctggccttgtcgtacgggaactggacttccatgccgcgcgatttgccgatccagttgcgctgcatggtcttgacctgctcaggccagcccggcagc                                                  <  7:128525‑M1/149‑100 (MQ=255)                                                                                                     tCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGAAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAGGCCAGCATCGGCCACg                                                 >  7:78171/1‑147 (MQ=255)                                                                                                       aCCGATTACGCCGACGAGCTGCTGGAGAGCGTTGACGAGCTGCGGGGCTGGCCTGAGCAGGTCAAGACCATTCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAGGCCAGCATCGTCCACGAAg                                              <  2:82397/148‑1 (MQ=255)                                                                                                        ccGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAGGCCAGCATCGGCCACGAAgg                                             >  4:268906/1‑148 (MQ=255)                                                                                                               cGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAGGCCAGCATCGGCCACGAAGGCACCCTc                                      >  4:2979/1‑148 (MQ=255)                                                                                                                 ccGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAGGCCAGCATCGGCCACGAAGGCACCCTCAAg                                   <  3:2979/149‑1 (MQ=255)                                                                                                                    acgaGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAGGCCAGCATCGGCCACGAAGGCACCCTCAAg                                   <  8:1262/146‑1 (MQ=255)                                                                                                                    acgaGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAGGCCAGCATCGGCCACGAAGGCACCCTCAAg                                   >  7:1262/1‑146 (MQ=255)                                                                                                                    acgaGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAGGCCAGCATCGGCCACGAAGGCACCCTCAAGGTc                                <  5:339866/149‑1 (MQ=255)                                                                                                                      gaGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAGGCCAGCATCGGCCACGAAGGCACCCTCAAGGTCtt                              <  3:268906/149‑1 (MQ=255)                                                                                                                            ctgGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAGGCCAGCATCGGCCACGAAGGCACCCTCAAGGTCTTcaccac                        <  8:201571/149‑1 (MQ=255)                                                                                                                              ggAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAGGCCAGCATCGGCCACGAAGGCACCCTCAAGGTCTTCACCAccc                      >  4:217148/1‑149 (MQ=255)                                                                                                                                 gagCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAGGCCAGCATCGGCCACGAAGGCACCCTCAAGGTCTTCACCACCCGTc                   >  3:112764/1‑149 (MQ=255)                                                                                                                                     cTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAGGCCAGCATCGGCCACGAAGGCACCCTCAAGGTCTTCACCACCCGTCCgtg               >  1:124303/1‑147 (MQ=255)                                                                                                                                     cTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAGGCCAGCATCGGCCACGAAGGCACCCTCAAGGTCTTCACCACCCGTCCGGa               <  6:299250/149‑1 (MQ=255)                                                                                                                                         aCGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAGGCCAGCATCGGCCACGAAGGCACCCTCAAGGTCTTCACCACCCGTCCGGacac            <  6:184007/148‑1 (MQ=255)                                                                                                                                           gAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAGGCCAGCATCGGCCCCGAAGGCACCCTCAAGGTCTTCACCACCCGTCCGGACACGCt         >  4:40950/1‑149 (MQ=255)                                                                                                                                           gAGCTGACGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCATTTCCCGTACGACAAGGCCAGCATCGGCCACGAAGGCACCCTCAAGGTCTTCACCACCCGTCCGGACACGCt         <  8:78171/149‑1 (MQ=255)                                                                                                                                             gCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAGGCCAGCATcggcagctcgtcaaggctctccagcagctcgtcggcgtaatcggtgatgc       <  7:128525‑M2/149‑51 (MQ=255)                                                                                                                                                 ccGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAGGCCAGCATcggcagctcgtcaaggctctccagcagctcgtcggcgtaatcggtgatgcgg     <  4:68088‑M2/147‑53 (MQ=255)                                                                                                                                                  cGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAGGCCAGCATCGGCCACGAAGGCACCCTCAAGGTCTTCACCACCCGTCCGGACACGCTGATGGgc  <  2:124303/149‑1 (MQ=255)                                                                                                                                                   gggCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAGGCCAGCATCGGCCACGAAGGCACCCTCAAGGTCTTCACCACCCGTCCg                 <  6:118592/133‑1 (MQ=255)                                                                                                                                                   gggCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAGGCCAGCATCGGCCACGAAGGCACCCTCAAGGTCTTCACCACCCGTCCg                 >  5:118592/1‑133 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GACCAGACCGTACTGGCCAACGAACAAGTCATCGACGGCCGTGGCTGGCGTTCGGGCGCGCTGATCGAGAAGCGCGAAATCCCGATGTACTACTTCCGCATCACCGATTACGCCGACGAGCTGCTGGAGAGCCTTGACGAGCTGCCGGGCTGGCCTGAGCAGGTCAAGACCATGCAGCGCAACTGGATCGGCAAATCGCGCGGCATGGAAGTCCAGTTCCCGTACGACAAGGCCAGCATCGGCCACGAAGGCACCCTCAAGGTCTTCACCACCCGTCCGGACACGCTGATGGGC  >  NC_002947/5456752‑5457045

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.